Evidence map›Paper›PMID 30896887›Full record

ArticleOncology reports2019

Transcriptome‑wide piRNA profiling in human gastric cancer.

Xiandong Lin, Yan Xia, Dan Hu, Qiao Mao, Zongyang Yu, Hejun Zhang, Chao Li, Gang Chen, Fen Liu, Weifeng Zhu and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Oncology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

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  17. Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer.International journal of molecular sciences · 2020
    Article
  18. KTN1 variants and risk for attention deficit hyperactivity disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 2 countries.

Xiandong LinLaboratory of Radiation Oncology and Radiobiology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Yan XiaDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Dan HuDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Qiao MaoPeople's Hospital of Deyang City, Deyang, Sichun 618000, P.R. China.
Zongyang YuDepartment of Medical Oncology, Fuzhou General Hospital of PLA, Fuzhou, Fujian 350025, P.R. China.
Hejun ZhangDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Chao LiFujian Provincial Key Laboratory of Translational Cancer Medicine, Fuzhou, Fujian 350014, P.R. China.
Gang ChenDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Fen LiuFujian University of Traditional Chinese Medicine, Fuzhou, Fujian 350002, P.R. China.
Weifeng ZhuDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Yi ShiDepartment of Pathology, Fujian Cancer Hospital and Fujian Medical University Cancer Hospital, Fuzhou, Fujian 350014, P.R. China.
Huihao ZhangThe First Affiliated Hospital, Fujian Medical University, Fuzhou, Fujian 350001, P.R. China.
Jianming ZhengHuashan Hospital, Fudan University School of Medicine, Shanghai 200040, P.R. China.
Tao SunHuashan Hospital, Fudan University School of Medicine, Shanghai 200040, P.R. China.
Jianying XuZhuhai Municipal Maternal and Children's Health Hospital, Zhuhai, Guangdong 519000, P.R. China.
Herta H ChaoDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT 06510, P.R. China.
Xiongwei ZhengFujian Provincial Key Laboratory of Translational Cancer Medicine, Fuzhou, Fujian 350014, P.R. China.
Xingguang LuοHuilongguan Hospital, Beijing University School of Clinical Medicine, Beijing 100096, P.R. China.
Fujian Medical University · CNFujian Provincial Cancer Hospital · CNBeijing HuiLongGuan Hospital · CNDeyang Stomatological Hospital · CNFudan University · CNFujian University of Traditional Chinese Medicine · CNFuzhou General Hospital of Nanjing Military Command · CNHuashan Hospital · CNWeihai Maternal and Child Health Hospital · CNYale University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Piwi‑interacting RNAs (piRNAs) comprise the largest class of non‑coding RNAs. They represent a molecular feature shared by all non‑aging biological systems, including germline and somatic cancer stem cells, which display an indefinite capacity of renewal and proliferation and are potentially immortal. They have been identified in animal stomachs, but their relationship with human gastric cancers remains largely unclear. The present study aimed to identify the piRNAs associated with human gastric cancers across the whole transcriptome. Fresh tumor tissues and adjacent non‑tumorous tissues from stomachs were examined using a piRNA microarray (23,677 piRNAs) that was then validated by qPCR. The differential expression of piRNAs between cases and controls was analyzed. The transposable elements (TEs) that are potentially targeted by the risk piRNAs were searched. The expression of the nearest genes that are complementary to the sequences of the piRNAs was examined in the stomach tissue. The regulatory effects of genome‑wide significant and replicated cancer‑risk DNA variants on the piRNA expression in stomach were tested. Based on the findings, we identified a total of 8,759 piRNAs in human stomachs. Of all, 50 were significantly (P<0.05) and differentially (>2‑fold change) expressed between the cases and controls, and 64.7% of the protein‑coding genes potentially regulated by the gastric cancer‑associated piRNAs were expressed in the human stomach. The expression of many cancer‑associated piRNAs was correlated with the genome‑wide and replicated cancer‑risk SNPs. In conclusion, we conclude that piRNAs are abundant in human stomachs and may play important roles in the etiological processes of gastric cancers.

Indexed as

Gene Expression Regulation, NeoplasticAdultAgedAnimalsCohort StudiesDNA Transposable ElementsFemaleGene Expression ProfilingHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideRNA, Small InterferingStomachStomach NeoplasmsDNA Transposable ElementsRNA, Small Interfering

Identifiers

PMID30896887
PMCPMC6448102
OpenAlexW2921134998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.