Evidence map›Paper›PMID 30896630›Full record

Observational studyMedicine2019

Panel-based NGS reveals disease-causing mutations in hearing loss patients using BGISEQ-500 platform.

Yan Sun, Jing Yuan, Limin Wu, Min Li, Xiaoli Cui, Chengbin Yan, Lique Du, Liangwei Mao, Jianfen Man, Wei Li and 4 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  6. Article
  7. Article
  8. Review
  9. Selenite Reduction byFrontiers in microbiology · 2022
    Article
  10. Article
  11. Article
  12. A Heterozygous Novel Mutation inFrontiers in pediatrics · 2020
    Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Yan SunBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Jing YuanReproductive Medicine Center, Department of Obstetrics and Gynecology, The First Affiliated Hospital of Anhui Medical University, Anhui Province Key Laboratory of Reproductive Health and Genetics, Biopreservation and Artificial Organs, Anhui Provincial Engineering Research Center, Anhui Medical University.
Limin WuCenter for Reproductive Medicine and Prenatal Diagnosis, Anhui Provincial Hospital, The First Affiliated Hospital of University of Science and Technology of China, Hefei.
Min LiPrenatal Diagnosis Center, Yancheng Maternity and Child Health Care Hospital, Yancheng, Jiangsu Province.
Xiaoli CuiBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Chengbin YanBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Lique DuBGI-Wuhan, BGI-Shenzhen, Wuhan, China.
Liangwei MaoBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Jianfen ManBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Wei LiBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Karsten KristiansenDepartment of Biology, University of Copenhagen, Copenhagen, Denmark.
Xuan WuBGI Genomics, BGI-Shenzhen, Shenzhen, China.
Weijun PanThe Center for Reproductive Medicine, Ma'anshan Maternal and Child Health Hospital, Ma'anshan, China.
Yun YangBGI Genomics, BGI-Shenzhen, Shenzhen, China.
BGI GenomicsBGI Group (China) · CNFirst Affiliated Hospital of Anhui Medical University · CNUniversity of Copenhagen · DKUniversity of Science and Technology of China · CNYancheng Second People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hearing loss is a highly heterogeneous disease presented with various phenotypes. Genetic testing of disease-causing mutations plays an important role in precise diagnosis and fertility guidance of heredity hearing loss. Here we reported an effective method employing target enrichment and BGISEQ-500 platform to detect clinically relevant alterations for heredity hearing patients in a single assay.In this study, we designed an array based chip, containing 127 genes related to hearing loss. Then we conducted targeted next-generation sequencing toward 58 patients to make a precise diagnosis using BGISEQ-500 platform.We successfully detected disease-causing mutations in 77.59% (45/58) of the patients with hearing loss. Finally, a total of 62 disease-causing mutations were identified, including 31 missense, 17 Indel, 11 splicing, 2 synonymous, and 1 copy number variant. 58.06% (36/62) of which has never been reported before.To our knowledge, this is the first report using BGISEQ-500 platform to investigate both syndromic and nonsyndromic hearing loss in the Chinese population. The results showed that this method can greatly assist and enhance hearing loss diagnosis and improve molecular diagnostics outcome.

Indexed as

AdolescentChildChild, PreschoolChinaDNA Copy Number VariationsFemaleGenetic Predisposition to DiseaseHearing LossHigh-Throughput Nucleotide SequencingHumansMaleYoung Adult

Identifiers

PMID30896630
PMCPMC6709004
OpenAlexW2972508013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.