Evidence map›Paper›PMID 30895662›Full record

ArticleEnvironmental microbiology2019

A feed-forward signalling circuit controls bacterial virulence through linking cyclic di-GMP and two mechanistically distinct sRNAs, ArcZ and RsmB.

Xiaochen Yuan, Quan Zeng, Devanshi Khokhani, Fang Tian, Geoffrey B Severin, Christopher M Waters, Jingsheng Xu, Xiang Zhou, George W Sundin, Abasiofiok M Ibekwe and 2 more

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Antagonistic Interactions BetweenInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Xiaochen YuanInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Jiangsu Key Laboratory for Food Quality and Safety-State Key Laboratory Cultivation Base of Ministry of Science and Technology, Nanjing, 210014, China.
Quan ZengDepartment of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, CT, 06511, USA.
Devanshi KhokhaniDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.
Fang TianInstitute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Geoffrey B SeverinDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Christopher M WatersDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, 48824, USA.
Jingsheng XuInstitute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Xiang ZhouSchool of Forestry and Biotechnology, Zhejiang Agricultural and Forestry University, Hangzhou, 311300, China.
George W SundinDepartment of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48824, USA.
Abasiofiok M IbekweAgricultural Research Service-US Salinity Laboratory, United States Department of Agriculture, Riverside, CA, 92507, USA.
Fengquan LiuInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Jiangsu Key Laboratory for Food Quality and Safety-State Key Laboratory Cultivation Base of Ministry of Science and Technology, Nanjing, 210014, China.
Ching-Hong YangDepartment of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53211, USA.ORCID 0000-0001-5330-7055
Michigan State University · USInstitute of Plant Protection · CNJiangsu Academy of Agricultural Sciences · CNUniversity of Wisconsin–Milwaukee · USAgricultural Research Service · USConnecticut Agricultural Experiment Station · USZhejiang A & F University · CN

Funding

From structure to systems: Understanding cyclic di-GMP control of transcriptionR01GM109259 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2015 to 2019
$2.0M
Developing novel technologies to address fundamental questions about second messenger signalingR03AI130554 · NIAID · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2017 to 2018
$144k
Earmarked Fund for China Agriculture Research System CARS-28-16Jiangsu Academy of Agricultural SciencesNational Institute of Food and Agriculture 2016-67030-24856National Institute of Food and Agriculture 2017-51106-27001NIAID NIH HHS R03 AI130554NIGMS NIH HHS R01 GM109259NIH Clinical Center AI130554NIH Clinical Center GM109259NIH HHS AI130554NIH HHS GM109259United States Department of AgricultureUniversity of Wisconsin-Milwaukee
6 · The paper itself

Abstract

Dickeya dadantii is a plant pathogen that causes soft rot disease on vegetable and potato crops. To successfully cause infection, this pathogen needs to coordinately modulate the expression of genes encoding several virulence determinants, including plant cell wall degrading enzymes (PCWDEs), type III secretion system (T3SS) and flagellar motility. Here, we uncover a novel feed-forward signalling circuit for controlling virulence. Global RNA chaperone Hfq interacts with an Hfq-dependent sRNA ArcZ and represses the translation of pecT, encoding a LysR-type transcriptional regulator. We demonstrate that the ability of ArcZ to be processed to a 50 nt 3'- end fragment is essential for its regulation of pecT. PecT down-regulates PCWDE and the T3SS by repressing the expression of a global post-transcriptional regulator- (RsmA-) associated sRNA encoding gene rsmB. In addition, we show that the protein levels of two cyclic di-GMP (c-di-GMP) diguanylate cyclases (DGCs), GcpA and GcpL, are repressed by Hfq. Further studies show that both DGCs are essential for the Hfq-mediated post-transcriptional regulation on RsmB. Overall, our report provides new insights into the interplays between ubiquitous signalling transduction systems that were most studied independently and sheds light on multitiered regulatory mechanisms for a precise disease regulation in bacteria.

Indexed as

Signal TransductionBacterial ProteinsCell WallCyclic GMPEnterobacteriaceaeGene Expression Regulation, BacterialPlant DiseasesRNA, BacterialRNA-Binding ProteinsRNA, Small UntranslatedType III Secretion SystemsVirulenceVirulence FactorsBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPRNA, BacterialRNA-Binding ProteinsRNA, Small UntranslatedType III Secretion SystemsVirulence Factors

Identifiers

PMID30895662
PMCPMC6677606
OpenAlexW2923315661

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.