Evidence map›Paper›PMID 30894748›Full record

ArticleNature2019

The expanding landscape of 'oncohistone' mutations in human cancers.

Benjamin A Nacev, Lijuan Feng, John D Bagert, Agata E Lemiesz, JianJiong Gao, Alexey A Soshnev, Ritika Kundra, Nikolaus Schultz, Tom W Muir, C David Allis

Abstract read
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 244 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
244citing papers in PubMed, 1 pooled it
19.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

244 citing papers in PubMed, 1 synthesis or guideline pooled it, 396 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Review

184 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Benjamin A NacevMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Lijuan FengLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY, USA.
John D BagertDepartment of Chemistry, Princeton University, Princeton, NJ, USA.
Agata E LemieszLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY, USA.
JianJiong GaoMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Alexey A SoshnevLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY, USA.
Ritika KundraMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Nikolaus SchultzMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Tom W MuirDepartment of Chemistry, Princeton University, Princeton, NJ, USA. muir@princeton.edu.
C David AllisMemorial Sloan Kettering Cancer Center, New York, NY, USA. alliscd@mail.rockefeller.edu.
Memorial Sloan Kettering Cancer Center · USRockefeller University · USPrinceton University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2015 to 2024
$17.6M
YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
The cBioPortal for Cancer GenomicsU24CA220457 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CERAMI, ETHAN, SANDER, CHRIS · 2017 to 2021
$6.4M
CLINICAL SCHOLARS BIOMEDICAL RESEARCH TRAINING PROGRAMT32CA009512 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Ping Chi · 1985 to 2026
$6.3M
Exploring second-tier post-translational modifications in chromatin biology: A new class of histone modifications with undetermined functionF32GM123659 · NIGMS · PRINCETON UNIVERSITY · PI BAGERT, JOHN DAVID · 2017 to 2018
$118k
NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA008748NCI NIH HHS T32 CA009512NCI NIH HHS U24 CA220457NCRR NIH HHS P41 RR000862NIGMS NIH HHS F32 GM123659
6 · The paper itself

Abstract

Mutations in epigenetic pathways are common oncogenic drivers. Histones, the fundamental substrates for chromatin-modifying and remodelling enzymes, are mutated in tumours including gliomas, sarcomas, head and neck cancers, and carcinosarcomas. Classical 'oncohistone' mutations occur in the N-terminal tail of histone H3 and affect the function of polycomb repressor complexes 1 and 2 (PRC1 and PRC2). However, the prevalence and function of histone mutations in other tumour contexts is unknown. Here we show that somatic histone mutations occur in approximately 4% (at a conservative estimate) of diverse tumour types and in crucial regions of histone proteins. Mutations occur in all four core histones, in both the N-terminal tails and globular histone fold domains, and at or near residues that contain important post-translational modifications. Many globular domain mutations are homologous to yeast mutants that abrogate the need for SWI/SNF function, occur in the key regulatory 'acidic patch' of histones H2A and H2B, or are predicted to disrupt the H2B-H4 interface. The histone mutation dataset and the hypotheses presented here on the effect of the mutations on important chromatin functions should serve as a resource and starting point for the chromatin and cancer biology fields in exploring an expanding role of histone mutations in cancer.

Indexed as

Cell Transformation, NeoplasticHistonesHumansLysineMethylationMutationNeoplasmsNucleosomesProtein DomainsProtein Processing, Post-TranslationalHistonesLysineNucleosomes

Identifiers

PMID30894748
PMCPMC6512987
OpenAlexW2923787428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.