Evidence map›Paper›PMID 30894615›Full record

ArticleScientific reports2019

The VQ motif-containing proteins in the diploid and octoploid strawberry.

José Garrido-Gala, José Javier Higuera, Juan Muñoz-Blanco, Francisco Amil-Ruiz, José L Caballero

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  3. Large-Scale Identification and Characterization Analysis ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

José Garrido-GalaDepartamento de Bioquímica y Biología Molecular, Edificio Severo Ochoa-C6, Campus Universitario de Rabanales y Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14071, Córdoba, Spain.ORCID 0000-0003-1357-3580
José Javier HigueraDepartamento de Bioquímica y Biología Molecular, Edificio Severo Ochoa-C6, Campus Universitario de Rabanales y Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14071, Córdoba, Spain.
Juan Muñoz-BlancoDepartamento de Bioquímica y Biología Molecular, Edificio Severo Ochoa-C6, Campus Universitario de Rabanales y Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14071, Córdoba, Spain.
Francisco Amil-RuizUnidad de Bioinformática, Servicio Central de Apoyo a la Investigación (SCAI), Universidad de Córdoba, 14071, Córdoba, Spain.ORCID 0000-0002-3470-0860
José L CaballeroDepartamento de Bioquímica y Biología Molecular, Edificio Severo Ochoa-C6, Campus Universitario de Rabanales y Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14071, Córdoba, Spain. bb1carej@uco.es.ORCID 0000-0002-2678-4849
University of Córdoba · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant VQ motif-containing proteins are a recently discovered class of plant regulatory proteins interacting with WRKY transcription factors capable of modulate their activity as transcriptional regulators. The short VQ motif (FxxhVQxhTG) is the main element in the WRKY-VQ interaction, whereas a newly identified variable upstream amino acid motif appears to be determinant for the WRKY specificity. The VQ family has been studied in several species and seems to play important roles in a variety of biological processes, including response to biotic and abiotic stresses. Here, we present a systematic study of the VQ family in both diploid (Fragaria vesca) and octoploid (Fragaria x ananassa) strawberry species. Thus, twenty-five VQ-encoding genes were identified and twenty-three were further confirmed by gene expression analysis in different tissues and fruit ripening stages. Their expression profiles were also studied in F. ananassa fruits affected by anthracnose, caused by the ascomycete fungus Colletotrichum, a major pathogen of strawberry, and in response to the phytohormones salicylic acid and methyl-jasmonate, which are well established as central stress signals to regulate defence responses to pathogens. This comprehensive analysis sheds light for a better understanding of putative implications of members of the VQ family in the defence mechanisms against this major pathogen in strawberry.

Indexed as

Gene Expression Regulation, PlantAcetatesAmino Acid MotifsColletotrichumCyclopentanesDiploidyDisease ResistanceFragariaFruitGene Expression ProfilingHost-Pathogen InteractionsOxylipinsPhylogenyPlant Growth RegulatorsPlant ProteinsPolyploidyAcetatesCyclopentanesmethyl jasmonateOxylipinsPlant Growth RegulatorsPlant ProteinsSalicylic AcidTranscription Factors

Identifiers

PMID30894615
PMCPMC6427031
OpenAlexW2923982894

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.