Evidence map›Paper›PMID 30894564›Full record

ArticleScientific reports2019

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315.

Jonna E Teikari, Rafael V Popin, Shengwei Hou, Matti Wahlsten, Wolfgang R Hess, Kaarina Sivonen

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jonna E TeikariDepartment of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014 Helsinki, Finland.ORCID 0000-0002-5797-7432
Rafael V PopinDepartment of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014 Helsinki, Finland.ORCID 0000-0003-0427-0326
Shengwei HouGenetics & Experimental Bioinformatics, Institute of Biology III, University Freiburg, Schänzlestraße 1, D-79104, Freiburg, Germany.ORCID 0000-0002-4474-7443
Matti WahlstenDepartment of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014 Helsinki, Finland.
Wolfgang R HessGenetics & Experimental Bioinformatics, Institute of Biology III, University Freiburg, Schänzlestraße 1, D-79104, Freiburg, Germany.
Kaarina SivonenDepartment of Microbiology, University of Helsinki, Viikinkaari 9, FI-00014 Helsinki, Finland. kaarina.sivonen@helsinki.fi.ORCID 0000-0002-2904-0458

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Baltic Sea is a shallow basin of brackish water in which the spatial salinity gradient is one of the most important factors contributing to species distribution. The Baltic Sea is infamous for its annual cyanobacterial blooms comprised of Nodularia spumigena, Aphanizomenon spp., and Dolichospermum spp. that cause harm, especially for recreational users. To broaden our knowledge of the cyanobacterial adaptation strategies for brackish water environments, we sequenced the entire genome of Dolichospermum sp. UHCC 0315, a species occurring not only in freshwater environments but also in brackish water. Comparative genomics analyses revealed a close association with Dolichospermum sp. UHCC 0090 isolated from a lake in Finland. The genome closure of Dolichospermum sp. UHCC 0315 unraveled a mixture of two subtypes in the original culture, and subtypes exhibited distinct buoyancy phenotypes. Salinity less than 3 g L

Indexed as

Genome, BacterialSaline WatersSalt ToleranceCyanobacteriaFinlandGenomicsOceans and Seas

Identifiers

PMID30894564
PMCPMC6426976

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.