Evidence map›Paper›PMID 30894555›Full record

SynthesisScientific reports2019

micro-RNAs dependent regulation of DNMT and HIF1α gene expression in thrombotic disorders.

Aatira Vijay, Prabhash Kumar Jha, Iti Garg, Manish Sharma, Mohammad Zahid Ashraf, Bhuvnesh Kumar

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Aatira VijayDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India.
Prabhash Kumar JhaDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India.
Iti GargDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India.
Manish SharmaDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India.
Mohammad Zahid AshrafDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India.
Bhuvnesh KumarDefence Institute of Physiology and Allied Sciences, DRDO, Delhi, India. bhuvnesh.drdo@gmail.com.
Defence Institute of Physiology and Allied Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) are involved in a wide variety of cellular processes and post-transcriptionally regulate several mechanism and diseases. However, contribution of miRNAs functioning during hypoxia and DNA methylation together is less understood. The current study was aimed to find a shared miRNAs signature upstream to hypoxia (via HIF gene family members) and methylation (via DNMT gene family members). This was followed by the global validation of the hypoxia related miRNA signature using miRNA microarray meta-analysis of the hypoxia induced human samples. We further concluded the study by looking into thrombosis related terms and pathways enriched during protein-protein interaction (PPI) network analysis of these two sets of gene family. Network prioritization of these shared miRNAs reveals miR-129, miR-19band miR-23b as top regulatory miRNAs. A comprehensive meta-analysis of microarray datasets of hypoxia samples revealed 29 differentially expressed miRNAs. GSEA of the interacting genes in the DNMT-HIF PPI network indicated thrombosis associated pathways including "Hemostasis", "TPO signaling pathway" and "angiogenesis". Interestingly, the study has generated a novel database of candidate miRNA signatures shared between hypoxia and methylation, and their relation to thrombotic pathways, which might aid in the development of potential therapeutic biomarkers.

Indexed as

BiomarkersComputational BiologyDNA (Cytosine-5-)-MethyltransferasesDown-RegulationGene ExpressionGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHumansHypoxia-Inducible Factor 1, alpha SubunitMicroarray AnalysisMicroRNAsProtein Interaction MapsSignal TransductionThrombosisBiomarkersDNA (Cytosine-5-)-MethyltransferasesHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitMicroRNAs

Identifiers

PMID30894555
PMCPMC6426883
OpenAlexW2922584778

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.