Evidence map›Paper›PMID 30894116›Full record

ArticleBMC genomics2019

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity.

Yiru A Wang, Basten L Snoek, Mark G Sterken, Joost A G Riksen, Jana J Stastna, Jan E Kammenga, Simon C Harvey

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  4. Using aPharmaceuticals (Basel, Switzerland) · 2022
    Article
  5. Genetic diversity estimates for themicroPublication biology · 2022
    Article
  6. Article
  7. Article
  8. WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.Database : the journal of biological databases and curation · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yiru A WangBiomolecular Research Group, School of Human and Life Sciences, Canterbury Christ Church University, North Holmes Road, Canterbury, CT1 1QU, UK.
Basten L SnoekLaboratory of Nematology, Wageningen University, 6708, PB, Wageningen, The Netherlands.
Mark G SterkenLaboratory of Nematology, Wageningen University, 6708, PB, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-7119-6213
Joost A G RiksenLaboratory of Nematology, Wageningen University, 6708, PB, Wageningen, The Netherlands.
Jana J StastnaBiomolecular Research Group, School of Human and Life Sciences, Canterbury Christ Church University, North Holmes Road, Canterbury, CT1 1QU, UK.
Jan E KammengaLaboratory of Nematology, Wageningen University, 6708, PB, Wageningen, The Netherlands.
Simon C HarveyBiomolecular Research Group, School of Human and Life Sciences, Canterbury Christ Church University, North Holmes Road, Canterbury, CT1 1QU, UK. simon.harvey@canterbury.ac.uk.
Canterbury Christ Church University · GBWageningen University & Research · NLUtrecht University · NL

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Leverhulme Trust Research Grant RPG-2016-040NIH HHS P40 OD010440
6 · The paper itself

Abstract

backgroundAccumulation of protein aggregates are a major hallmark of progressive neurodegenerative disorders such as Parkinson's disease and Alzheimer's disease. Transgenic Caenorhabditis elegans nematodes expressing the human synaptic protein α-synuclein in body wall muscle show inclusions of aggregated protein, which affects similar genetic pathways as in humans. It is not however known how the effects of α-synuclein expression in C. elegans differs among genetic backgrounds. Here, we compared gene expression patterns and investigated the phenotypic consequences of transgenic α-synuclein expression in five different C. elegans genetic backgrounds.

resultsTranscriptome analysis indicates that α-synuclein expression effects pathways associated with nutrient storage, lipid transportation and ion exchange and that effects vary depending on the genetic background. These gene expression changes predict that a range of phenotypes will be affected by α-synuclein expression. We confirm this, showing that α-synuclein expression delayed development, reduced lifespan, increased rate of matricidal hatching, and slows pharyngeal pumping. Critically, these phenotypic effects depend on the genetic background and coincide with the core changes in gene expression.

conclusionsTogether, our results show genotype-specific effects and core alterations in both gene expression and in phenotype in response to α-synuclein expression. We conclude that the effects of α-synuclein expression are substantially modified by the genetic background, illustrating that genetic background needs to be considered in C. elegans models of neurodegenerative disease.

Indexed as

PhenotypeTranscription, Geneticalpha-SynucleinAnimalsCaenorhabditis elegansGene ExpressionGene Expression Profilingalpha-SynucleinCaenorhabditis elegansGene expression profileGenetic backgroundNatural variationProtein aggregationα-Synuclein

Identifiers

PMID30894116
PMCPMC6427842
OpenAlexW2943722819

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.