Evidence map›Paper›PMID 30893603›Full record

ArticleCell reports2019

Widespread Alterations in Translation Elongation in the Brain of Juvenile Fmr1 Knockout Mice.

Sohani Das Sharma, Jordan B Metz, Hongyu Li, Benjamin D Hobson, Nicholas Hornstein, David Sulzer, Guomei Tang, Peter A Sims

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
9.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 80 citations in OpenAlex.

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  13. Antisense oligonucleotide rescue of CGG expansion-dependentProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sohani Das SharmaDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA.
Jordan B MetzDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Medical Scientist Training Program, Columbia University Medical Center, New York, NY 10032, USA.
Hongyu LiDepartment of Neurology, Columbia University Medical Center, New York, NY 10032, USA.
Benjamin D HobsonDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Medical Scientist Training Program, Columbia University Medical Center, New York, NY 10032, USA.
Nicholas HornsteinDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Medical Scientist Training Program, Columbia University Medical Center, New York, NY 10032, USA.
David SulzerDepartment of Neurology, Columbia University Medical Center, New York, NY 10032, USA; Department of Psychiatry, Columbia University Medical Center, New York, NY 10032, USA; Department of Pharmacology, Columbia University Medical Center, New York, NY 10032, USA; Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, NY 10032, USA.
Guomei TangDepartment of Neurology, Columbia University Medical Center, New York, NY 10032, USA.
Peter A SimsDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Department of Biochemistry & Molecular Biophysics, Columbia University Medical Center, New York, NY 10032, USA; Sulzberger Columbia Genome Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address: pas2182@cumc.columbia.edu.
Columbia University Irving Medical Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
The Dopamine Synapse and Associative LearningR01DA007418 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI David Sulzer · 1999 to 2026
$9.4M
Development of Fluorescent False NeurotransmittersR01MH108186 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SAMES, DALIBOR, SULZER, DAVID · 2015 to 2024
$5.8M
A Microfluidic System for Image-Guided RNA-Seq of Single Cells in GlioblastomaK01EB016071 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2012 to 2016
$863k
Mitochondrial dysfunction due to aberrant mTOR-regulated mitophagy in autismK01MH096956 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TANG, GUOMEI · 2013 to 2016
$734k
Gene Expression Programs in Maturing Dopamine Neurons: Temporal Regulation, Subcellular Localization, and Alteration by AmphetamineF30DA047775 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBSON, BENJAMIN · 2019 to 2023
$239k
The Role of Phosphor-RPS6 and Translational Regulation in GliomaF31NS089106 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HORNSTEIN, NICHOLAS JAMES · 2014 to 2016
$125k
NIBIB NIH HHS K01 EB016071NIDA NIH HHS F30 DA047775NIDA NIH HHS R01 DA007418NIGMS NIH HHS T32 GM007367NIMH NIH HHS K01 MH096956NIMH NIH HHS R01 MH108186NINDS NIH HHS F31 NS089106
6 · The paper itself

Abstract

FMRP (fragile X mental retardation protein) is a polysome-associated RNA-binding protein encoded by Fmr1 that is lost in fragile X syndrome. Increasing evidence suggests that FMRP regulates both translation initiation and elongation, but the gene specificity of these effects is unclear. To elucidate the impact of Fmr1 loss on translation, we utilize ribosome profiling for genome-wide measurements of ribosomal occupancy and positioning in the cortex of 24-day-old Fmr1 knockout mice. We find a remarkably coherent reduction in ribosome footprint abundance per mRNA for previously identified, high-affinity mRNA binding partners of FMRP and an increase for terminal oligopyrimidine (TOP) motif-containing genes canonically controlled by mammalian target of rapamycin-eIF4E-binding protein-eIF4E binding protein-eukaryotic initiation factor 4E (mTOR-4E-BP-eIF4E) signaling. Amino acid motif- and gene-level analyses both show a widespread reduction of translational pausing in Fmr1 knockout mice. Our findings are consistent with a model of FMRP-mediated regulation of both translation initiation through eIF4E and elongation that is disrupted in fragile X syndrome.

Indexed as

Cerebral CortexFragile X SyndromePeptide Chain Elongation, TranslationalSignal TransductionAnimalsFragile X Messenger Ribonucleoprotein 1MiceMice, KnockoutFmr1 protein, mouseFragile X Messenger Ribonucleoprotein 1fragile X syndromeribosome profilingtranslational regulation

Identifiers

PMID30893603
PMCPMC6457272
OpenAlexW2951588146

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.