Evidence map›Paper›PMID 30891499›Full record

ArticleScience advances2019

Cellular microRNA detection with miRacles: microRNA- activated conditional looping of engineered switches.

Arun Richard Chandrasekaran, Molly MacIsaac, Paromita Dey, Oksana Levchenko, Lifeng Zhou, Madeline Andres, Bijan K Dey, Ken Halvorsen

Abstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Article
  2. Aptamer-based DNA nanoswitches for multiplexed protein detection.Chemical communications (Cambridge, England) · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Light-responsive DNA nanostructures.Nature reviews. Chemistry · 2026
    Review
  7. Ligation-assisted target recycling for DNA nanoswitch biosensors.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Aptamer-based DNA nanoswitches for multiplexed protein detection.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Arun Richard ChandrasekaranThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0001-6757-5464
Molly MacIsaacThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-3632-4205
Paromita DeyThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.
Oksana LevchenkoThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.
Lifeng ZhouThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.
Madeline AndresThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-3733-6128
Bijan K DeyThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0001-9386-2475
Ken HalvorsenThe RNA Institute, University at Albany, State University of New York, Albany, NY 12222, USA.ORCID 0000-0002-2578-1339

Funding

Manipulating nucleic acids: applications in RNA biosensing, single-molecule analysis, and DNA nanotechnologyR35GM124720 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI Ken A Halvorsen · 2017 to 2026
$4.6M
Single-molecule mechanical detection of protein and microRNA cancer biomarkersR21CA212827 · NCI · BOSTON CHILDREN'S HOSPITAL · PI WONG, WESLEY PHILIP · 2017 to 2019
$676k
NCI NIH HHS R21 CA212827NIGMS NIH HHS R35 GM124720
6 · The paper itself

Abstract

MicroRNAs are short noncoding regulatory RNAs that are increasingly used as disease biomarkers. Detection of microRNAs can be arduous and expensive and often requires amplification, labeling, or radioactive probes. Here, we report a single-step, nonenzymatic microRNA detection assay using conformationally responsive DNA nanoswitches. Termed miRacles (microRNA-activated conditional looping of engineered switches), our assay has subattomole sensitivity and single-nucleotide specificity using an agarose gel electrophoresis readout. We detect cellular microRNAs from nanogram-scale RNA extracts of differentiating muscle cells and multiplex our detection for several microRNAs from one biological sample. We demonstrate 1-hour detection without expensive equipment or reagents, making this assay a compelling alternative to quantitative polymerase chain reaction and Northern blotting.

Indexed as

Inverted Repeat SequencesAnimalsBase PairingCell DifferentiationCell LineDNA, Single-StrandedElectrophoresis, Agar GelFluorescent DyesGenetic EngineeringHumansIntercalating AgentsMiceMicroRNAsMyoblastsSensitivity and SpecificityDNA, Single-StrandedFluorescent DyesIntercalating AgentsMicroRNAs

Identifiers

PMID30891499
PMCPMC6415953

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.