Evidence map›Paper›PMID 30891334›Full record

ArticleBiomedical optics express2019

Parallel deep neural networks for endoscopic OCT image segmentation.

Dawei Li, Jimin Wu, Yufan He, Xinwen Yao, Wu Yuan, Defu Chen, Hyeon-Cheol Park, Shaoyong Yu, Jerry L Prince, Xingde Li

Abstract read
In one paragraph

Article in Biomedical optics express, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Deep learning in optical coherence tomography: Where are the gaps?Clinical & experimental ophthalmology · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Deep Learning in Biomedical Optics.Lasers in surgery and medicine · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dawei LiDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
Jimin WuDepartment of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Yufan HeDepartment of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Xinwen YaoDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
Wu YuanDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
Defu ChenDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
Hyeon-Cheol ParkDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.
Shaoyong YuDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Jerry L PrinceDepartment of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Xingde LiDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA.

Funding

Micro Coherence Imaging Technology for Assessing Obstructive Lung Disease in vivoR01HL121788 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI BROWN, ROBERT H, LI, XINGDE · 2014 to 2018
$3.7M
Nonlinear Optical Endomicroscopy for Optical Biopsy of Cancer in Internal OrgansR01CA153023 · NCI · JOHNS HOPKINS UNIVERSITY · PI LI, XINGDE · 2011 to 2015
$2.6M
3D segmentation and registration of macular SD-OCT for application in MSR01EY024655 · NEI · JOHNS HOPKINS UNIVERSITY · PI PRINCE, JERRY L · 2014 to 2017
$1.6M
NCI NIH HHS R01 CA153023NEI NIH HHS R01 EY024655NHLBI NIH HHS R01 HL121788
6 · The paper itself

Abstract

We report parallel-trained deep neural networks for automated endoscopic OCT image segmentation feasible even with a limited training data set. These U-Net-based deep neural networks were trained using a modified dice loss function and manual segmentations of ultrahigh-resolution cross-sectional images collected by an 800 nm OCT endoscopic system. The method was tested on

Identifiers

PMID30891334
PMCPMC6420296

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.