Evidence map›Paper›PMID 30891054›Full record

ArticleFrontiers in plant science2019

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs.

Cristiane P G Calixto, Nikoleta A Tzioutziou, Allan B James, Csaba Hornyik, Wenbin Guo, Runxuan Zhang, Hugh G Nimmo, John W S Brown

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 81 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Determination of Differential Alternative Splicing Under Stress Conditions.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Alternative splicing of theForestry research · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Role of phasiRNAs in plant-pathogen interactions: molecular perspectives and bioinformatics tools.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Cristiane P G CalixtoPlant Sciences Division, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
Nikoleta A TzioutziouPlant Sciences Division, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
Allan B JamesInstitute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
Csaba HornyikCell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.
Wenbin GuoPlant Sciences Division, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
Runxuan ZhangInformation and Computational Sciences, The James Hutton Institute, Dundee, United Kingdom.
Hugh G NimmoInstitute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.
John W S BrownPlant Sciences Division, School of Life Sciences, University of Dundee, Dundee, United Kingdom.
James Hutton Institute · GBUniversity of Dundee · GBUniversity of Glasgow · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants re-program their gene expression when responding to changing environmental conditions. Besides differential gene expression, extensive alternative splicing (AS) of pre-mRNAs and changes in expression of long non-coding RNAs (lncRNAs) are associated with stress responses. RNA-sequencing of a diel time-series of the initial response of

Indexed as

alternative splicingcold transcriptomediel time-coursehigh-resolution RNAseqlong non-coding RNAprimary microRNA

Identifiers

PMID30891054
PMCPMC6413719
OpenAlexW2918528086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.