Evidence map›Paper›PMID 30890717›Full record

ArticleNature communications2019

H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis.

Ashot S Harutyunyan, Brian Krug, Haifen Chen, Simon Papillon-Cavanagh, Michele Zeinieh, Nicolas De Jay, Shriya Deshmukh, Carol C L Chen, Jad Belle, Leonie G Mikael and 23 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 219 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
219citing papers in PubMed, 2 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

219 citing papers in PubMed, 2 syntheses or guidelines pooled it, 379 citations in OpenAlex.

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  16. Dissecting polycomb complexes for enhanced fetal hemoglobin production.bioRxiv : the preprint server for biology · 2026
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159 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 12 institutions in 4 countries.

Ashot S HarutyunyanDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.ORCID http://orcid.org/0000-0002-9050-9315
Brian KrugDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Haifen ChenDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Simon Papillon-CavanaghDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Michele ZeiniehDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Nicolas De JayDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Shriya DeshmukhDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Carol C L ChenDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Jad BelleDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Leonie G MikaelDepartment of Pediatrics, McGill University, and The Research Institute of the McGill University Health Center, Montreal, QC, H4A 3J1, Canada.
Dylan M MarchioneDepartment of Biochemistry and Biophysics, and Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Rui LiDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Hamid NikbakhtDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Bo HuDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Gael CagnoneDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.ORCID http://orcid.org/0000-0001-9664-3518
Warren A CheungDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Abdulshakour MohammadniaDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Denise BechetDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Damien FauryDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Melissa K McConechyDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Manav PathaniaSamantha Dickson Brain Cancer Unit, University College London Cancer Institute, London, WCE1 6DD, United Kingdom.
Siddhant U JainDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA.
Benjamin EllezamDepartment of Pathology, Centre Hospitalier Universitaire Sainte-Justine, Université de Montréal, Montréal, QC, H3T 1C5, Canada.ORCID http://orcid.org/0000-0002-8716-7924
Alexander G WeilDepartment of Pediatric Neurosurgery, Centre Hospitalier Universitaire Sainte-Justine, Université de Montréal, Montréal, QC, H3T 1C5, Canada.
Alexandre MontpetitMcGill University and Genome Quebec Innovation Centre, Montreal, QC, H3A 0G1, Canada.
Paolo SalomoniSamantha Dickson Brain Cancer Unit, University College London Cancer Institute, London, WCE1 6DD, United Kingdom.
Tomi PastinenDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Chao LuDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0003-0982-8122
Peter W LewisDepartment of Biomolecular Chemistry, School of Medicine and Public Health and Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, 53715, USA.ORCID http://orcid.org/0000-0002-9816-7823
Benjamin A GarciaDepartment of Biochemistry and Biophysics, and Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Claudia L KleinmanDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada.
Nada JabadoDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada. nada.jabado@mcgill.ca.ORCID http://orcid.org/0000-0003-2485-3692
Jacek MajewskiDepartment of Human Genetics, McGill University, Montreal, QC, H3A 1B1, Canada. jacek.majewski@mcgill.ca.ORCID http://orcid.org/0000-0003-3572-9558
McGill University · CACentre Hospitalier Universitaire Sainte-Justine · CAChildren's Mercy Hospital · USJewish General Hospital · CAMcGill University Health Centre · CAUniversity of Pennsylvania · USUniversity of Wisconsin–Madison · USColumbia University Irving Medical Center · USGerman Center for Neurodegenerative Diseases · DELondon Cancer · GBMcGill Genome Centre · CAMcGill University and Génome Québec Innovation Centre · CA

Funding

Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2015 to 2024
$17.6M
YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
NRSA Training CoreTL1TR001880 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$10.0M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Medical Research Council MC_U132670601Medical Research Council MR/M00094X/1NCATS NIH HHS TL1 TR001880NCI NIH HHS P01 CA196539NCRR NIH HHS P41 RR000862NIGMS NIH HHS R01 GM110174NIGMS NIH HHS T32 GM008275NIH HHS GM110174NIH HHS P01-CA196539NIH HHS T32GM008275NIH HHS TL1TR001880
6 · The paper itself

Abstract

Lys-27-Met mutations in histone 3 genes (H3K27M) characterize a subgroup of deadly gliomas and decrease genome-wide H3K27 trimethylation. Here we use primary H3K27M tumor lines and isogenic CRISPR-edited controls to assess H3K27M effects in vitro and in vivo. We find that whereas H3K27me3 and H3K27me2 are normally deposited by PRC2 across broad regions, their deposition is severely reduced in H3.3K27M cells. H3K27me3 is unable to spread from large unmethylated CpG islands, while H3K27me2 can be deposited outside these PRC2 high-affinity sites but to levels corresponding to H3K27me3 deposition in wild-type cells. Our findings indicate that PRC2 recruitment and propagation on chromatin are seemingly unaffected by K27M, which mostly impairs spread of the repressive marks it catalyzes, especially H3K27me3. Genome-wide loss of H3K27me3 and me2 deposition has limited transcriptomic consequences, preferentially affecting lowly-expressed genes regulating neurogenesis. Removal of H3K27M restores H3K27me2/me3 spread, impairs cell proliferation, and completely abolishes their capacity to form tumors in mice.

Indexed as

AdolescentAgedAnimalsBrain NeoplasmsCarcinogenesisCell Line, TumorCell ProliferationChildChromatinCpG IslandsCRISPR-Cas SystemsDNA MethylationEpigenesis, GeneticFemaleGene EditingGene Expression Regulation, NeoplasticChromatinHistonesLysineMethioninePolycomb Repressive Complex 2

Identifiers

PMID30890717
PMCPMC6425035
OpenAlexW2923032782

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.