Evidence map›Paper›PMID 30890560›Full record

ArticleThe Journal of biological chemistry2019

The juxtamembrane linker in neutral sphingomyelinase-2 functions as an intramolecular allosteric switch that activates the enzyme.

Prajna Shanbhogue, Reece M Hoffmann, Michael V Airola, Rohan Maini, David J Hamelin, Miguel Garcia-Diaz, John E Burke, Yusuf A Hannun

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Neutral sphingomyelinase 2: A promising drug target for CNS disease.Advances in pharmacology (San Diego, Calif.) · 2025
    Review
  3. Article
  4. Article
  5. Review
  6. Neutral sphingomyelinase-2 and cardiometabolic diseases.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Prajna ShanbhogueFrom the Departments of Biochemistry and Cell Biology.
Reece M Hoffmannthe Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8N 1A1, Canada.
Michael V AirolaFrom the Departments of Biochemistry and Cell Biology.
Rohan MainiFrom the Departments of Biochemistry and Cell Biology.
David J Hamelinthe Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8N 1A1, Canada.
Miguel Garcia-DiazPharmacological Sciences, Stony Brook University, Stony Brook, New York 11794.
John E Burkethe Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8N 1A1, Canada.ORCID 0000-0001-7904-9859
Yusuf A HannunFrom the Departments of Biochemistry and Cell Biology, yusuf.hannun@stonybrookmedicine.edu.
Institute of Cell Biology · UAUniversity of Victoria · CACellular Biomedicine Group (United States) · USStony Brook University · US

Funding

Sphingolipids in Cancer Therapy and AngiogenesisP01CA097132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YUSUF AWNI HANNUN · 2003 to 2026
$30.8M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Neutral Sphingomyelinases and Bioactive CeramidesR35GM118128 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2016 to 2025
$7.9M
Structure and regulation of lipid metabolism and transportR35GM128666 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Michael Virgil Airola · 2018 to 2026
$4.0M
Mechanisms of mitochondrial transcriptionR01GM100021 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2012 to 2016
$1.5M
A Simultaneous SAXS/WAXS Detector System for Solving Biological StructuresS10OD012331 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI ALLAIRE, MARC · 2012 to 2012
$1.1M
CIHR 148596NCI NIH HHS P01 CA097132NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM100021NIGMS NIH HHS R35 GM118128NIGMS NIH HHS R35 GM128666NIH HHS S10 OD012331
6 · The paper itself

Abstract

Neutral sphingomyelinase 2 (nSMase2) produces the bioactive lipid ceramide and has important roles in neurodegeneration, cancer, and exosome formation. Although nSMase2 has low basal activity, it is fully activated by phosphatidylserine (PS). Previous work showed that interdomain interactions within nSMase2 are needed for PS activation. Here, we use multiple approaches, including small angle X-ray scattering, hydrogen-deuterium exchange-MS, circular dichroism and thermal shift assays, and membrane yeast two-hybrid assays, to define the mechanism mediating this interdomain interactions within nSMase2. In contrast to what we previously assumed, we demonstrate that PS binding at the N-terminal and juxtamembrane regions of nSMase2 rather acts as a conformational switch leading to interdomain interactions that are critical to enzyme activation. Our work assigns a unique function for a class of linkers of lipid-activated, membrane-associated proteins. It indicates that the linker actively participates in the activation mechanism via intramolecular interactions, unlike the canonical linkers that typically aid protein dimerization or localization.

Indexed as

Allosteric RegulationAmino AcidsCatalytic DomainEnzyme ActivationHumansHydroxyureaMutationProtein ConformationSaccharomyces cerevisiaeScattering, Small AngleSphingomyelin PhosphodiesteraseX-Ray DiffractionAmino AcidsHydroxyureaSMPD3 protein, humanSphingomyelin Phosphodiesteraseceramideenzyme mechanismlipidsphingolipidsphingomyelinase

Identifiers

PMID30890560
PMCPMC6509483
OpenAlexW2923285734

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.