Evidence map›Paper›PMID 30889809›Full record

ArticleInternational journal of molecular sciences2019

Genome-Wide Genetic Diversity and Population Structure of Tunisian Durum Wheat Landraces Based on DArTseq Technology.

Cyrine Robbana, Zakaria Kehel, M'barek Ben Naceur, Carolina Sansaloni, Filippo Bassi, Ahmed Amri

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  9. Genetic Diversity and Population Structure of a WideInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cyrine RobbanaFaculté des Sciences de Bizerte, Jarzouna, 7021 Bizerte, Tunisia. cyrine_rob@yahoo.fr.ORCID 0000-0001-6846-3210
Zakaria KehelInternational Center for Agricultural Research in the Dry Areas (ICARDA), 10112 Rabat, Morocco. Z.Kehel@cgiar.org.
M'barek Ben NaceurBanque Nationale de Gènes, Boulevard du Leader Yasser Arafat Z. I Charguia 1, 1080 Tunis, Tunisia. nour3alanour@yahoo.com.
Carolina SansaloniCentro Internacional de Mejoramiento de Maíz y Trigo (CIMMYT), El Batán, 56237 Texcoco, Mexico. C.Sansaloni@cgiar.org.
Filippo BassiInternational Center for Agricultural Research in the Dry Areas (ICARDA), 10112 Rabat, Morocco. F.Bassi@cgiar.org.ORCID 0000-0002-1164-5598
Ahmed AmriInternational Center for Agricultural Research in the Dry Areas (ICARDA), 10112 Rabat, Morocco. A.Amri@cgiar.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tunisia, being part of the secondary center of diversity for durum wheat, has rich unexploited landraces that are being continuously lost and replaced by high yielding modern cultivars. This study aimed to investigate the genetic diversity and population structure of 196 durum wheat lines issued from landraces collected from Tunisia using Diversity Array Technology sequencing (DArTseq) and to understand possible ways of introduction in comparing them to landraces from surrounding countries. A total of 16,148 polymorphic DArTseq markers covering equally the A and B genomes were effective to assess the genetic diversity and to classify the accessions. Cluster analysis and discriminant analysis of principal components (DAPC) allowed us to distinguish five distinct groups that matched well with the farmer's variety nomenclature. Interestingly, Mahmoudi and Biskri landraces constitute the same gene pool while Jenah Zarzoura constitutes a completely different group. Analysis of molecular variance (AMOVA) showed that the genetic variation was among rather than within the landraces. DAPC analysis of the Tunisian, Mediterranean and West Asian landraces confirmed our previous population structure and showed a genetic similarity between the Tunisian and the North African landraces with the exception of Jenah Zarzoura being the most distant. The genomic characterization of the Tunisian collection will enhance their conservation and sustainable use.

Indexed as

Genetics, PopulationGenetic VariationGenome, PlantAllelesAsia, WesternDiscriminant AnalysisGene FrequencyGenetic MarkersHeterozygoteMediterranean RegionPhylogenyPrincipal Component AnalysisSequence Analysis, DNATriticumTunisiaGenetic Markerscenter of diversityDArTseq technologydurum wheatgenetic diversitypopulation structureTunisian landraces

Identifiers

PMID30889809
PMCPMC6471223

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.