Evidence map›Paper›PMID 30889379›Full record

ArticleCancer cell2019

The Proteogenomic Landscape of Curable Prostate Cancer.

Ankit Sinha, Vincent Huang, Julie Livingstone, Jenny Wang, Natalie S Fox, Natalie Kurganovs, Vladimir Ignatchenko, Katharina Fritsch, Nilgun Donmez, Lawrence E Heisler and 18 more

Abstract read
In one paragraph

Article in Cancer cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed, 1 pooled it
29.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 1 synthesis or guideline pooled it, 270 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Protein disulfide isomerases regulate androgen receptor stability and promote prostate cancer cell growth and survival.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Identification of non-canonical peptides with moPepGen.bioRxiv : the preprint server for biology · 2025
    Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 2 countries.

Ankit SinhaDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada.
Vincent HuangOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Julie LivingstoneOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Jenny WangOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada; Department of Pathology and Molecular Medicine, Queen's University, Kingston, ON K7L 3N6, Canada; Queen's Cancer Research Institute, Queen's University, Kingston, ON K7L 3N6, Canada.
Natalie S FoxDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Natalie KurganovsOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Vladimir IgnatchenkoPrincess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Katharina FritschDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Nilgun DonmezVancouver Prostate Centre, Vancouver, BC V6H 3Z6, Canada.
Lawrence E HeislerOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Yu-Jia ShiahOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Cindy Q YaoOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Javier A AlfaroDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Stas VolikVancouver Prostate Centre, Vancouver, BC V6H 3Z6, Canada.
Anna LapukVancouver Prostate Centre, Vancouver, BC V6H 3Z6, Canada.
Michael FraserOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Ken KronPrincess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Alex MurisonPrincess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Mathieu LupienDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada.
Cenk SahinalpVancouver Prostate Centre, Vancouver, BC V6H 3Z6, Canada.
Colin C CollinsVancouver Prostate Centre, Vancouver, BC V6H 3Z6, Canada; Department of Urologic Sciences, University of British Columbia, Vancouver, BC V5Z 1M9, Canada.
Bernard TetuDepartment of Pathology and Research Centre of CHU de Québec-Université Laval, Québec City, QC G1V 4G2, Canada.
Mehdi MasoomianDepartment of Pathology, Laboratory Medicine Program, University Health Network, Toronto, ON M5G 2C4, Canada.
David M BermanDepartment of Pathology and Molecular Medicine, Queen's University, Kingston, ON K7L 3N6, Canada; Queen's Cancer Research Institute, Queen's University, Kingston, ON K7L 3N6, Canada.
Theodorus van der KwastPrincess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada; Department of Pathology, Laboratory Medicine Program, University Health Network, Toronto, ON M5G 2C4, Canada.
Robert G BristowDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada; Department of Radiation Oncology, University of Toronto, Toronto, ON M5T 1P5, Canada.
Thomas KislingerDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada. Electronic address: thomas.kislinger@utoronto.ca.
Paul C BoutrosDepartment of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada; Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada; Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON M5S 1A8, Canada; Department of Human Genetics, University of California, 12-109 CHS, 10833 Le Conte Avenue, Los Angeles, CA 90095, USA; Department of Urology, University of California, Los Angeles, CA 90024, USA; Jonsson Comprehensive Cancer Centre, University of California, Los Angeles, CA 90024, USA; Institute for Precision Health, University of California, Los Angeles, CA 90024, USA. Electronic address: pboutros@mednet.ucla.edu.
Ontario Institute for Cancer Research · CAUniversity Health Network · CAUniversity of Toronto · CAPrincess Margaret Cancer Centre · CAQueen's University · CAUniversité Laval · CAUniversity of British Columbia · CA

Funding

Development of Protein Biomarkers in Post-DRE Urine for use in Liquid Biopsy of Prostate CancerU01CA214194 · NCI · EASTERN VIRGINIA MEDICAL SCHOOL · PI BOUTROS, PAUL CHRISTOPHER, KISLINGER, THOMAS · 2016 to 2021
$2.5M
CIHR PJT 156357NCI NIH HHS U01 CA214194
6 · The paper itself

Abstract

DNA sequencing has identified recurrent mutations that drive the aggressiveness of prostate cancers. Surprisingly, the influence of genomic, epigenomic, and transcriptomic dysregulation on the tumor proteome remains poorly understood. We profiled the genomes, epigenomes, transcriptomes, and proteomes of 76 localized, intermediate-risk prostate cancers. We discovered that the genomic subtypes of prostate cancer converge on five proteomic subtypes, with distinct clinical trajectories. ETS fusions, the most common alteration in prostate tumors, affect different genes and pathways in the proteome and transcriptome. Globally, mRNA abundance changes explain only ∼10% of protein abundance variability. As a result, prognostic biomarkers combining genomic or epigenomic features with proteomic ones significantly outperform biomarkers comprised of a single data type.

Indexed as

AdultAgedAged, 80 and overBiomarkers, TumorCell Line, TumorEpigenomicsGene Expression ProfilingHumansMaleMiddle AgedPrognosisProstatic NeoplasmsProteogenomicsProto-Oncogene Proteins c-etsTranslocation, GeneticWhole Genome SequencingBiomarkers, TumorProto-Oncogene Proteins c-etsbiomarkerepigenomegenomemulti-omic featuresprostate cancerproteometranscriptome

Identifiers

PMID30889379
PMCPMC6511374
OpenAlexW2922343610

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.