Evidence map›Paper›PMID 30887877›Full record

ArticleProceedings. Biological sciences2019

Polyclonal symbiont populations in hydrothermal vent tubeworms and the environment.

Julia Polzin, Philip Arevalo, Thomas Nussbaumer, Martin F Polz, Monika Bright

Open access · hybridAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Julia Polzin1 Department of Limnology and Bio-Oceanography, University of Vienna , Althanstrasse 14, 1090 Vienna , Austria.
Philip Arevalo2 Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Parsons Laboratory , 15 Vassar Street, Cambridge, MA 02139 , USA.
Thomas Nussbaumer3 Institute of Environmental Medicine (IEM), Helmholtz Center Munich , Ingolstädter Landstrasse 1, 85764 Neuherberg , Germany.
Martin F Polz2 Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Parsons Laboratory , 15 Vassar Street, Cambridge, MA 02139 , USA.
Monika Bright1 Department of Limnology and Bio-Oceanography, University of Vienna , Althanstrasse 14, 1090 Vienna , Austria.
Parsons (United States) · USUniversity of Vienna · ATHelmholtz Zentrum München · DE

Funding

Austrian Science Fund FWF P 31543
6 · The paper itself

Abstract

Horizontally transmitted symbioses usually house multiple and variable symbiont genotypes that are acquired from a much more diverse environmental pool via partner choice mechanisms. However, in the deep-sea hydrothermal vent tubeworm Riftia pachyptila (Vestimentifera, Siboglinidae), it has been suggested that the Candidatus Endoriftia persephone symbiont is monoclonal. Here, we show with high-coverage metagenomics that adult R. pachyptila house a polyclonal symbiont population consisting of one dominant and several low-frequency variants. This dominance of one genotype is confirmed by multilocus gene sequencing of amplified housekeeping genes in a broad range of host individuals where three out of four loci ( atpA, uvrD and recA) revealed no genomic differences, while one locus ( gyrB) was more diverse in adults than in juveniles. We also analysed a metagenome of free-living Endoriftia and found that the free-living population showed greater sequence variability than the host-associated population. Most juveniles and adults shared a specific dominant genotype, while other genotypes can dominate in few individuals. We suggest that although generally permissive, partner choice is selective enough to restrict uptake of some genotypes present in the environment.

Indexed as

GenotypeSymbiosisAnimalsGammaproteobacteriaGenetic VariationHydrothermal VentsMetagenomicsPacific OceanPolychaetaSeawatermetagenomicsmutualismpartner choicepopulation geneticssymbiont distributiontubeworm symbiosis

Identifiers

PMID30887877
PMCPMC6408604
OpenAlexW2914701612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.