Evidence map›Paper›PMID 30886425›Full record

ArticleNature genetics2019

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton.

Yan Hu, Jiedan Chen, Lei Fang, Zhiyuan Zhang, Wei Ma, Yongchao Niu, Longzhen Ju, Jieqiong Deng, Ting Zhao, Jinmin Lian and 29 more

Open access · hybridAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 505 papers.

0numbers the graph read from it
0cells of the map it votes in
505citing papers in PubMed
230.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

505 citing papers in PubMed, 1,139 citations in OpenAlex.

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  9. Plants (Basel, Switzerland) · 2026
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  11. Combined genome and transcriptome analysis of boll weight and lint percentage traits in Gossypium barbadense.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  12. Functional Characterization ofPlants (Basel, Switzerland) · 2026
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  13. Article
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  15. Distinct evolutionary trajectories of gene duplication modes in 40 diploid cotton genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  16. Relief of GbDEAH12Nature communications · 2026
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445 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 7 institutions in 4 countries.

Yan Hu *Institute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Jiedan Chen *Institute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-5223-8243
Lei Fang *Institute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Zhiyuan Zhang *Institute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Wei Ma *Institute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Yongchao Niu *Genosys, Inc., Shenzhen, China.ORCID http://orcid.org/0000-0002-9774-5417
Longzhen JuState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Jieqiong DengState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Ting ZhaoInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Jinmin LianGenosys, Inc., Shenzhen, China.
Kobi BaruchNRGene, Ltd, Ness Ziona, Israel.
David FangCotton Fiber Bioscience Research Unit, US Department of Agriculture-Agricultural Research Service-Southern Regional Research Center, New Orleans, LA, USA.ORCID http://orcid.org/0000-0003-0036-5459
Xia LiuEsquel Group, Wanchai, Hong Kong, China.
Yong-Ling RuanInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-8394-4474
Mehboob-Ur RahmanPlant Genomics and Molecular Breeding Laboratory, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan.
Jinlei HanCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agricultural and Forestry University, Fuzhou, China.
Kai WangCenter for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agricultural and Forestry University, Fuzhou, China.ORCID http://orcid.org/0000-0002-1074-0438
Qiong WangState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.ORCID http://orcid.org/0000-0001-8843-7060
Huaitong WuState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.ORCID http://orcid.org/0000-0001-8064-0953
Gaofu MeiState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Yihao ZangState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Zegang HanState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Chenyu XuState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Weijuan ShenState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Duofeng YangState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Zhanfeng SiInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Fan DaiInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Liangfeng ZouGenosys, Inc., Shenzhen, China.ORCID http://orcid.org/0000-0003-2343-4891
Fei HuangGenosys, Inc., Shenzhen, China.
Yulin BaiEsquel Group, Wanchai, Hong Kong, China.
Yugao ZhangEsquel Group, Wanchai, Hong Kong, China.
Avital BrodtNRGene, Ltd, Ness Ziona, Israel.
Hilla Ben-HamoNRGene, Ltd, Ness Ziona, Israel.
Xiefei ZhuState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
Baoliang ZhouState Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.ORCID http://orcid.org/0000-0002-0877-1702
Xueying GuanInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Shuijin ZhuInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Xiaoya ChenNational Center for Gene Research, State Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0000-0002-2909-8414
Tianzhen ZhangInstitute of Crop Science, Plant Precision Breeding Academy, Zhejiang Provincial Key Laboratory of Crop Genetic Resources, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China. cotton@zju.edu.cn.ORCID http://orcid.org/0000-0001-7873-4547
Nanjing Agricultural University · CNZhejiang University · CNEsquel Group (China) · CNFujian Agriculture and Forestry University · CNAgricultural Research Service · USChinese Academy of Sciences · CNNational Institute for Biotechnology and Genetic Engineering · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide. After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to better survive harsh environments than Gossypium barbadense, which produces superior-quality fibers. The global genetic and molecular bases for these interspecies divergences were unknown. Here we report high-quality de novo-assembled genomes for these two cultivated allotetraploid species with pronounced improvement in repetitive-DNA-enriched centromeric regions. Whole-genome comparative analyses revealed that species-specific alterations in gene expression, structural variations and expanded gene families were responsible for speciation and the evolutionary history of these species. These findings help to elucidate the evolution of cotton genomes and their domestication history. The information generated not only should enable breeders to improve fiber quality and resilience to ever-changing environmental conditions but also can be translated to other crops for better understanding of their domestication history and use in improvement.

Indexed as

Chromosomes, PlantCotton FiberDomesticationGene ExpressionGenetic VariationGenome, PlantGenome-Wide Association StudyGossypiumRepetitive Sequences, Nucleic Acid

Identifiers

PMID30886425
OpenAlexW2921474111

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.