Evidence map›Paper›PMID 30886374›Full record

ArticleNature ecology & evolution2019

Megaphylogeny resolves global patterns of mushroom evolution.

Torda Varga, Krisztina Krizsán, Csenge Földi, Bálint Dima, Marisol Sánchez-García, Santiago Sánchez-Ramírez, Gergely J Szöllősi, János G Szarkándi, Viktor Papp, László Albert and 52 more

Open access · hybridAbstract read
In one paragraph

Article in Nature ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
46.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 294 citations in OpenAlex.

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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

62 authors at 20 institutions in 18 countries.

Torda VargaSynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.
Krisztina KrizsánSynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.
Csenge FöldiSynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.ORCID http://orcid.org/0000-0002-9982-0679
Bálint DimaDepartment of Plant Anatomy, Institute of Biology, Eötvös Loránd University, Budapest, Hungary.ORCID http://orcid.org/0000-0003-2099-3903
Marisol Sánchez-GarcíaClark University, Worcester, MA, USA.
Santiago Sánchez-RamírezDepartment of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-5963-9410
Gergely J SzöllősiMTA-ELTE 'Lendület' Evolutionary Genomics Research Group, Department of Biological Physics, Eötvös Loránd University, Budapest, Hungary.
János G SzarkándiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.ORCID http://orcid.org/0000-0002-5341-8246
Viktor PappDepartment of Botany, Faculty of Horticultural Science, Szent István University, Budapest, Hungary.ORCID http://orcid.org/0000-0001-6994-8156
László AlbertHungarian Mycological Society, Budapest, Hungary.
William AndreopoulosUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Claudio AngeliniVia Cappuccini 78, Pordenone, Italy.
Vladimír AntonínDepartment of Botany, Moravian Museum, Brno, Czech Republic.
Kerrie W BarryUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Neale L BougherScience and Conservation, Department of Biodiversity, Western Australian Herbarium, Kensington, WA, Australia.
Peter BuchananManaaki Whenua-Landcare Research, Auckland, New Zealand.
Bart BuyckInstitut de Systématique, Evolution, Biodiversité (ISYEB-UMR 7205), Muséum National d'Histoire Naturelle, Sorbonne Université, CNRS, Paris, France.
Viktória BenseSynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.
Pam CatchesideState Herbarium of South Australia, Adelaide, South Australia, Australia.ORCID http://orcid.org/0000-0002-8530-8500
Mansi ChovatiaUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Jerry CooperManaaki Whenua-Landcare Research, Lincoln, New Zealand.ORCID http://orcid.org/0000-0003-4994-3897
Wolfgang DämonOberfeldstraße 9, St. Georgen bei Salzburg, Austria.
Dennis DesjardinDepartment of Biology, San Francisco State University, San Francisco, CA, USA.
Péter FinyZsombolyai u. 56., Székesfehérvár, Hungary.
József GemlNaturalis Biodiversity Center, Leiden, the Netherlands.
Sajeet HaridasUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.ORCID http://orcid.org/0000-0002-0229-0975
Karen HughesDepartment of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN, USA.
Alfredo JustoClark University, Worcester, MA, USA.
Dariusz KarasińskiDepartment of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland.
Ivona KautmanovaNatural History Museum, Slovak National Museum, Bratislava, Slovakia.
Brigitta KissSynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary.
Sándor KocsubéDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Heikki KotirantaBiodiversity Unit, Finnish Environment Institute, Helsinki, Finland.
Kurt M LaButtiUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Bernardo E LechnerInstituto de Micología y Botánica, CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina.
Kare LiimatainenThe Jodrell Laboratory, Royal Botanic Gardens, Kew, UK.
Anna LipzenUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Zoltán LukácsDamjanich u. 54, Budapest, Hungary.
Sirma MihaltchevaUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Louis N MorgadoNaturalis Biodiversity Center, Leiden, the Netherlands.
Tuula NiskanenThe Jodrell Laboratory, Royal Botanic Gardens, Kew, UK.
Machiel E NoordeloosNaturalis Biodiversity Center, Leiden, the Netherlands.
Robin A OhmDepartment of Biology, Microbiology, Utrecht University, Utrecht, the Netherlands.
Beatriz Ortiz-SantanaCenter for Forest Mycology Research, Northern Research Station, US Forest Service, Madison, WI, USA.
Clark OvreboDepartment of Biology, University of Central Oklahoma, Edmond, OK, USA.
Nikolett RáczDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Robert RileyUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
Anton SavchenkoBotanical Museum, University of Helsinki, Helsinki, Finland.
Anton ShiryaevInstitute of Plant and Animal Ecology, Russian Academy of Sciences, Ekaterinburg, Russia.
Karl SoopDepartment of Cryptogamic Botany, Swedish Museum of Natural History, Stockholm, Sweden.
Viacheslav SpirinBotanical Museum, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-5436-6997
Csilla SzebenyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Michal TomšovskýFaculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-9505-6175
Rodham E TullossHerbarium Rooseveltensis Amanitarum, Roosevelt, NJ, USA.
Jessie UehlingPlant and Microbial Biology, University of California, Berkeley, CA, USA.
Igor V GrigorievUS Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.ORCID http://orcid.org/0000-0002-3136-8903
Csaba VágvölgyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Tamás PappDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Francis M MartinInstitut National de la Recherche Agronomique, Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems, Champenoux, France.
Otto MiettinenBotanical Museum, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-7502-710X
David S HibbettClark University, Worcester, MA, USA.
László G NagySynthetic and Systems Biology Unit, Biological Research Centre, Hungarian Academy of Sciences, Szeged, Hungary. lnagy@fungenomelab.com.ORCID http://orcid.org/0000-0002-4102-8566
Joint Genome Institute · USHUN-REN Szegedi Biológiai Kutatóközpont · HUUniversity of Szeged · HUClark University · USNaturalis Biodiversity Center · NLUniversity of Helsinki · FIEötvös Loránd University · HUManaaki Whenua – Landcare Research · NZRoyal Botanic Gardens, Kew · GBAustralian National Herbarium · AUCentre National de la Recherche Scientifique · FRConsejo Nacional de Investigaciones Científicas y Técnicas · AREcologie et Ecophysiologie Forestières · FRFinnish Environment Institute · FIInstitute of Plant and Animal Ecology · RUKodolányi János University of Applied Sciences · HUMagyar Agrár- és Élettudományi Egyetem · HUMendel University in Brno · CZMoravian Museum · CZRoosevelt University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.

Indexed as

Genome, FungalAgaricalesGenetic VariationPhylogeny

Identifiers

PMID30886374
PMCPMC6443077
OpenAlexW2921108547

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