Evidence map›Paper›PMID 30886340›Full record

Trial reportEuropean journal of human genetics : EJHG2019

De novo single-nucleotide and copy number variation in discordant monozygotic twins reveals disease-related genes.

Nirmal Vadgama, Alan Pittman, Michael Simpson, Niranjanan Nirmalananthan, Robin Murray, Takeo Yoshikawa, Peter De Rijk, Elliott Rees, George Kirov, Deborah Hughes and 9 more

Open access · bronzeAbstract readClinical TrialTwin Study
In one paragraph

Trial report in European journal of human genetics : EJHG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Memory/Active T-Cell Activation Is Associated with Immunotherapeutic Response in Fumarate Hydratase-Deficient Renal Cell Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Molecular Landscape of Tourette's Disorder.International journal of molecular sciences · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 4 countries.

Nirmal VadgamaInstitute of Neurology, University College London, London, WC1N 3BG, UK.
Alan PittmanInstitute of Neurology, University College London, London, WC1N 3BG, UK.ORCID 0000-0002-8112-2987
Michael SimpsonDivision of Genetics and Molecular Medicine, King's College London, London, UK.
Niranjanan NirmalananthanSt George's University Hospitals NHS Foundation Trust, London, SW17 0QT, UK.
Robin MurrayInstitute of Psychiatry, Psychology, and Neuroscience, King's College, London, UK.
Takeo YoshikawaRIKEN Brain Science Institute, Wako, Saitama, 351-0198, Japan.ORCID 0000-0003-2791-6679
Peter De RijkApplied Molecular Genomics Group, University of Antwerp, Antwerp, Belgium.ORCID 0000-0001-8558-9288
Elliott ReesCentre for Neuropsychiatric Genetics and Genomics, Institute of Psychological Medicine and Clinical Neurosciences, Cardiff University, Cardiff, UK.
George KirovCentre for Neuropsychiatric Genetics and Genomics, Institute of Psychological Medicine and Clinical Neurosciences, Cardiff University, Cardiff, UK.
Deborah HughesInstitute of Neurology, University College London, London, WC1N 3BG, UK.
Tomas FitzgeraldThe European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.
Mark KristiansenUCL Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
Kerra PearceUCL Great Ormond Street Institute of Child Health, London, WC1N 1EH, UK.
Eliza CerveiraJackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Qihui ZhuJackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Chengsheng ZhangJackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Charles LeeJackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
John HardyInstitute of Neurology, University College London, London, WC1N 3BG, UK.
Jamal NasirCell Biology and Genetics Research Centre, St. George's University of London, London, UK. jamal.nasir@northampton.ac.uk.
Jackson Laboratory · USUniversity College London · GBCardiff University · GBGreat Ormond Street Hospital · GBKing's College London · GBEuropean Bioinformatics Institute · GBRIKEN Center for Brain Science · JPSt George’s University Hospitals NHS Foundation Trust · GBSt George's, University of London · GBUniversity of Antwerp · BE

Funding

Medical Research Council G0701075Medical Research Council G0901254Medical Research Council MR/K01417X/1Medical Research Council MR/L010305/1Medical Research Council MR/L501542/1Medical Research Council MR/N026004/1Parkinson's UK G-0907
6 · The paper itself

Abstract

Recent studies have demonstrated genetic differences between monozygotic (MZ) twins. To test the hypothesis that early post-twinning mutational events associate with phenotypic discordance, we investigated a cohort of 13 twin pairs (n = 26) discordant for various clinical phenotypes using whole-exome sequencing and screened for copy number variation (CNV). We identified a de novo variant in PLCB1, a gene involved in the hydrolysis of lipid phosphorus in milk from dairy cows, associated with lactase non-persistence, and a variant in the mitochondrial complex I gene MT-ND5 associated with amyotrophic lateral sclerosis (ALS). We also found somatic variants in multiple genes (TMEM225B, KBTBD3, TUBGCP4, TFIP11) in another MZ twin pair discordant for ALS. Based on the assumption that discordance between twins could be explained by a common variant with variable penetrance or expressivity, we screened the twin samples for known pathogenic variants that are shared and identified a rare deletion overlapping ARHGAP11B, in the twin pair manifesting with either schizotypal personality disorder or schizophrenia. Parent-offspring trio analysis was implemented for two twin pairs to assess potential association of variants of parental origin with susceptibility to disease. We identified a de novo variant in RASD2 shared by 8-year-old male twins with a suspected diagnosis of autism spectrum disorder (ASD) manifesting as different traits. A de novo CNV duplication was also identified in these twins overlapping CD38, a gene previously implicated in ASD. In twins discordant for Tourette's syndrome, a paternally inherited stop loss variant was detected in AADAC, a known candidate gene for the disorder.

Indexed as

Base SequenceDNA Copy Number VariationsSequence DeletionAdolescentAdultAgedAmyotrophic Lateral SclerosisAutism Spectrum DisorderChildExome SequencingFemaleHumansMaleMiddle AgedTourette SyndromeTwins, Monozygotic

Identifiers

PMID30886340
PMCPMC6777616
OpenAlexW2922447477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.