Evidence map›Paper›PMID 30886248›Full record

ArticleScientific reports2019

Persistence and continuous evolution of the human respiratory syncytial virus in northern Taiwan for two decades.

Hsin Chi, Kuang-Liang Hsiao, Li-Chuan Weng, Chang-Pan Liu, Hsin-Fu Liu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Hsin ChiDepartment of Medicine, MacKay Medicine College, New Taipei, Taiwan.
Kuang-Liang HsiaoDepartment of Medical Research, MacKay Memorial Hospital, Taipei, Taiwan.ORCID 0000-0003-4397-7762
Li-Chuan WengDepartment of Medical Research, MacKay Memorial Hospital, Taipei, Taiwan.
Chang-Pan LiuDepartment of Medicine, MacKay Medicine College, New Taipei, Taiwan.
Hsin-Fu LiuDepartment of Medical Research, MacKay Memorial Hospital, Taipei, Taiwan. hsinfu@mmh.org.tw.
Mackay Memorial Hospital · TWNational Taiwan Ocean University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study aimed to characterize the molecular epidemiology, phylogenetic relationship, and population dynamics of the G protein gene in clinical respiratory syncytial virus (RSV) strains isolated from northern Taiwan. We analyzed a total of 160 and 116 G protein gene sequences of RSV-A and RSV-B representative strains, respectively, from 804 clinical viral stocks collected between July 2000 and June 2016. Population dynamic patterns of the RSV G protein gene were analyzed using Bayesian inference through the Markov chain Monte Carlo framework. A phylogenetic analysis revealed that RSV-A from Taiwan could be categorized into GA2, GA5, and GA7 lineages. GA2 of RSV-A could be further divided into NA1, NA2, NA4, and ON1 clades. These RSV-A lineages has been replaced over time, whereas RSV-B strains from Taiwan continually evolved from a single lineage with significant time-dependent waves. Four putative positive selection sites were observed in both RSV-A and RSV-B. The Bayesian skyline plot revealed that the local population dynamics of RSV were associated with lineage displacement events. Both circulating subtypes and population dynamics represented a unique local pattern. Our results affirm the necessity of continuing molecular surveillance of RSV to attain a more comprehensive understanding of epidemics.

Indexed as

Evolution, MolecularChildChild, PreschoolGenes, ViralGTP-Binding ProteinsHumansInfantInfant, NewbornLongitudinal StudiesMolecular EpidemiologyMonte Carlo MethodPhylogenyRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsSelection, GeneticTaiwanGTP-Binding Proteins

Identifiers

PMID30886248
PMCPMC6423049
OpenAlexW2922435330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.