ArticleScientific reports2019
Genetic dissection of seedling vigour in a diverse panel from the 3,000 Rice (Oryza sativa L.) Genome Project.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- OsSAP3 Enhances Rice Seed Vigor by Modulating Hydrogen Peroxide Homeostasis.Rice (New York, N.Y.) · 2026Article
- Genome-Wide Identification of the RhoGAP Gene Family and Main Function of OsRhoGAP2 in Seed Germination of Rice by Transcriptome Analysis.Rice (New York, N.Y.) · 2025Article
- Review
- Genome-Wide Genetic Architecture for Common Scab (International journal of molecular sciences · 2025Article
- Genome-wide association study identified QTLs and genes underlying early seedling vigour in aus rice (Oryza sativa L.).Molecular genetics and genomics : MGG · 2024Article
- Genome-Wide Association-Based Identification of Alleles, Genes and Haplotypes Influencing Yield in Rice (International journal of molecular sciences · 2024Article
- A point mutation in VIG1 boosts development and chilling tolerance in rice.Nature communications · 2024Article
- A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2024Article
- Article
- The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2024Article
- Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Progress in the study of functional genes related to direct seeding of rice.Molecular breeding : new strategies in plant improvement · 2023Review
- Genome-wide genetic architecture for plant maturity and drought tolerance in diploid potatoes.Frontiers in genetics · 2023Article
- Genome-wide association studies in rice germplasm reveal significant genomic regions for root and yield-related traits under aerobic and irrigated conditions.Frontiers in plant science · 2023Article
- Identification of superior haplotypes in a diverse natural population for breeding desirable plant height in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice.Plant physiology · 2022Article
- A model-guided holistic review of exploiting natural variation of photosynthesis traits in crop improvement.Journal of experimental botany · 2022Review
- Proofing Direct-Seeded Rice with Better Root Plasticity and Architecture.International journal of molecular sciences · 2021Review
- Construction of dominant rice population under dry cultivation by seeding rate and nitrogen rate interaction.Scientific reports · 2021Article
- Mapping QTL hotspots associated with weed competitive traits in backcross population derived from Oryza sativa L. and O. glaberrima Steud.Scientific reports · 2020Article
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9 authors.
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Abstract
Seedling vigour (SV) is important for direct seeding rice (Oryza sativa L.), especially in a paddy-direct seeding system, but the genetic mechanisms behind the related traits remain largely unknown. Here, we used 744 germplasms, having at least two subsets, for the detection of quantitative trait loci (QTLs) affecting the SV-related traits tiller number, plant height, and aboveground dry weight at three sampling stages, 27, 34, and 41 d after sowing. A joint map based on GAPIT and mrMLM produced a satisfying balance between type I and II errors. In total, 42 QTL regions, containing 18 (42.9%) previously reported overlapping QTL regions and 24 new ones, responsible for SV were detected throughout the genome. Four QTL regions, qSV1a, qSV3e, qSV4c, and qSV7c, were delimited and harboured quantitative trait nucleotides that are responsible for SV-related traits. Favourable haplotype mining for the candidate genes within these four regions, as well as the early SV gene OsGA20ox1, was performed, and the favourable haplotypes were presented with donors from the 3,000 Rice Genome Project. This work provides new information and materials for the future molecular breeding of direct seeding rice, especially in paddy-direct seeding cultivation systems.
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