Evidence map›Paper›PMID 30886003›Full record

ArticleJournal of cell science2019

CryoAPEX - an electron tomography tool for subcellular localization of membrane proteins.

Ranjan Sengupta, Michael J Poderycki, Seema Mattoo

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. FicD sensitizes cellular response to glucose fluctuations in mouse embryonic fibroblasts.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Volume electron microscopy.Nature reviews. Methods primers · 2022
    Article
  7. Production of an Active, Human Membrane Protein inInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The Cytosolic Phospholipase ABiomolecules · 2020
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ranjan SenguptaDepartment of Biological Sciences, Purdue University, 915 W. State St., LILY G-227, West Lafayette, IN 47907, USA.
Michael J PoderyckiDepartment of Biological Sciences, Purdue University, 915 W. State St., LILY G-227, West Lafayette, IN 47907, USA.ORCID 0000-0003-1546-6535
Seema MattooDepartment of Biological Sciences, Purdue University, 915 W. State St., LILY G-227, West Lafayette, IN 47907, USA smattoo@purdue.edu.ORCID 0000-0003-3260-0046
Purdue University West Lafayette · US

Funding

Role of Fic Proteins in Cellular SignalingR01GM100092 · NIGMS · PURDUE UNIVERSITY · PI MATTOO, SEEMA · 2015 to 2019
$1.7M
NIGMS NIH HHS R01 GM100092
6 · The paper itself

Abstract

We describe a method, termed cryoAPEX, which couples chemical fixation and high-pressure freezing of cells with peroxidase tagging (APEX) to allow precise localization of membrane proteins in the context of a well-preserved subcellular membrane architecture. Further, cryoAPEX is compatible with electron tomography. As an example, we apply cryoAPEX to obtain a high-resolution three-dimensional contextual map of the human FIC (filamentation induced by cAMP) protein, HYPE (also known as FICD). HYPE is a single-pass membrane protein that localizes to the endoplasmic reticulum (ER) lumen and regulates the unfolded protein response. Alternate cellular locations for HYPE have been suggested. CryoAPEX analysis shows that, under normal and/or resting conditions, HYPE localizes robustly within the subdomains of the ER and is not detected in the secretory pathway or other organelles. CryoAPEX is broadly applicable for assessing both lumenal and cytosol-facing membrane proteins.

Indexed as

Chemokine CCL7CryopreservationCytosolElectron Microscope TomographyEndoplasmic ReticulumHEK293 CellsHumansMembrane ProteinsNucleotidyltransferasesCCL7 protein, humanChemokine CCL7FICD protein, humanMembrane ProteinsNucleotidyltransferasesCryoAPEXCryofixationElectron tomographyFIC AMPylationMembrane protein

Identifiers

PMID30886003
PMCPMC6451417
OpenAlexW2951156535

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.