Evidence map›Paper›PMID 30884426›Full record

ArticleVirology2019

Discovery of a highly divergent hepadnavirus in shrews from China.

Fang-Yuan Nie, Jun-Hua Tian, Xian-Dan Lin, Bin Yu, Jian-Guang Xing, Jian-Hai Cao, Edward C Holmes, Runlin Z Ma, Yong-Zhen Zhang

Open access · greenAbstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Fang-Yuan NieState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China; State Key Laboratory for Infectious Disease Prevention and Control; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases; Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.
Jun-Hua TianWuhan Center for Disease Control and Prevention, Wuhan, China.
Xian-Dan LinWenzhou Center for Disease Control and Prevention, Wenzhou, Zhejiang Province, China.
Bin YuWuhan Center for Disease Control and Prevention, Wuhan, China.
Jian-Guang XingWencheng Center for Disease Control and Prevention, Wencheng, Zhejiang Province, China.
Jian-Hai CaoLongwan Center for Disease Control and Prevention, Longwan District, Wenzhou, Zhejiang Province, China.
Edward C HolmesMarie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia; Shanghai Public Health Clinical Center & Institute of Biomedical Sciences, Fudan University, Shanghai, China.
Runlin Z MaState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. Electronic address: rlma@genetics.ac.cn.
Yong-Zhen ZhangState Key Laboratory for Infectious Disease Prevention and Control; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases; Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China; Shanghai Public Health Clinical Center & Institute of Biomedical Sciences, Fudan University, Shanghai, China. Electronic address: zhangyongzhen@icdc.cn.
Chinese Academy of Sciences · CNWuhan Center for Disease Control and Prevention · CNShanghai Public Health Clinical Center · CNThe University of Sydney · AUZhejiang Center for Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Limited sampling means that relatively little is known about the diversity and evolutionary history of mammalian members of the Hepadnaviridae (genus Orthohepadnavirus). An important case in point are shrews, the fourth largest group of mammals, but for which there is limited knowledge on the role they play in viral evolution and emergence. Here, we report the discovery of a novel shrew hepadnavirus. The newly discovered virus, denoted shrew hepatitis B virus (SHBV), is divergent to be considered a new species of Orthohepadnavirus. Phylogenetic analysis revealed that these viruses were usually most closely related to TBHBV (tent-making bat hepatitis B virus), known to be able to infect human hepatocytes, and had a similar genome structure, although SHBV fell in a more basal position in the surface protein phylogeny. In sum, these data suggest that shrews are natural hosts for hepadnaviruses and may have played an important role in their long-term evolution.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsChinaGenome, ViralHepadnaviridaeHepadnaviridae InfectionsHepatocytesHumansOrthohepadnavirusPhylogenySequence AlignmentShrewsViral ProteinsViral ProteinsCross-species transmissionEvolutionHepadnavirusesPhylogenyShrews

Identifiers

PMID30884426
PMCPMC7172195
OpenAlexW2922177563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.