Evidence map›Paper›PMID 30883679›Full record

ArticleBiotechnology and bioengineering2019

Reduced apoptosis in Chinese hamster ovary cells via optimized CRISPR interference.

Kai Xiong, Kim Fabiano Marquart, Karen Julie la Cour Karottki, Shangzhong Li, Isaac Shamie, Jae Seong Lee, Signe Gerling, Nan Cher Yeo, Alejandro Chavez, Gyun Min Lee and 2 more

Open access · greenAbstract read
In one paragraph

Article in Biotechnology and bioengineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. CRISPR Technologies in Chinese Hamster Ovary Cell Line Engineering.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Decoupling Growth and Protein Production in CHO Cells: A Targeted Approach.Frontiers in bioengineering and biotechnology · 2021
    Article
  19. Cell culture bioprocessing - the road taken and the path forward.Current opinion in chemical engineering · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Kai XiongThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.
Kim Fabiano MarquartThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.
Karen Julie la Cour KarottkiThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.
Shangzhong LiDepartment of Pediatrics, University of California, San Diego, California.
Isaac ShamieDepartment of Pediatrics, University of California, San Diego, California.
Jae Seong LeeDepartment of Molecular Science and Technology, Ajou University, Suwon, Republic of Korea.
Signe GerlingThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.
Nan Cher YeoDepartment of Pharmacology and Toxicology, Precision Medicine Institute, University of Alabama, Birmingham, Alabama.
Alejandro ChavezDepartment of Pathology and Cell Biology, Columbia University College of Physicians and Surgeons, New York, New York.
Gyun Min LeeThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.ORCID 0000-0002-9876-7378
Nathan E LewisDepartment of Pediatrics, University of California, San Diego, California.ORCID 0000-0001-7700-3654
Helene Faustrup KildegaardThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Denmark.
Novo Nordisk Foundation · DKFoundation Center · USAjou University · KRColumbia University · USKorea Advanced Institute of Science and Technology · KRUniversity of Alabama · US

Funding

Unraveling the mammalian secretory pathway through systems biology and algorithm developmentR35GM119850 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LEWIS, NATHAN ENOCH · 2016 to 2025
$4.3M
NIGMS NIH HHS R35 GM119850
6 · The paper itself

Abstract

Chinese hamster ovary (CHO) cells are widely used for biopharmaceutical protein production. One challenge limiting CHO cell productivity is apoptosis stemming from cellular stress during protein production. Here we applied CRISPR interference (CRISPRi) to downregulate the endogenous expression of apoptotic genes Bak, Bax, and Casp3 in CHO cells. In addition to reduced apoptosis, mitochondrial membrane integrity was improved and the caspase activity was reduced. Moreover, we optimized the CRISPRi system to enhance the gene repression efficiency in CHO cells by testing different repressor fusion types. An improved Cas9 repressor has been identified by applying C-terminal fusion of a bipartite repressor domain, KRAB-MeCP2, to nuclease-deficient Cas9. These results collectively demonstrate that CHO cells can be rescued from cell apoptosis by targeted gene repression using the CRISPRi system.

Indexed as

bcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinCaspase 3CRISPR-Cas SystemsGene TargetingAnimalsApoptosisCHO CellsCricetulusCRISPR-Associated Protein 9bcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinCaspase 3CRISPR-Associated Protein 9apoptosisBakBaxCasp3caspaseCHOCRISPRimitochondrial membrane integrity

Identifiers

PMID30883679
PMCPMC6545153
OpenAlexW2925211463

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.