Evidence map›Paper›PMID 30882366›Full record

ArticleThe Journal of clinical investigation2019

Dengue-specific CD8+ T cell subsets display specialized transcriptomic and TCR profiles.

Yuan Tian, Mariana Babor, Jerome Lane, Grégory Seumois, Shu Liang, N D Suraj Goonawardhana, Aruna D De Silva, Elizabeth J Phillips, Simon A Mallal, Ricardo da Silva Antunes and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

  1. Trial
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  4. Dengue and severe dengue.Clinical microbiology reviews · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Yuan TianDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Mariana BaborDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Jerome LaneDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Grégory SeumoisDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Shu LiangDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
N D Suraj GoonawardhanaDepartment of Paraclinical Sciences, General Sir John Kotelawala Defense University, Ratmalana, Sri Lanka.
Aruna D De SilvaDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Elizabeth J PhillipsDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Simon A MallalDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Ricardo da Silva AntunesDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Alba GrifoniDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Pandurangan VijayanandDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Daniela WeiskopfDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Bjoern PetersDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
Alessandro SetteDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, California, USA.
La Jolla Institute for Immunology · USMurdoch University · AUGeneral Sir John Kotelawala Defence University · LK

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Bjoern Peters · 2015 to 2026
$36.7M
CyTOF Mass CytometerS10OD018499 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROTTY, SHANE P · 2014 to 2014
$802k
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NCRR NIH HHS S10 RR027366NIAID NIH HHS U19 AI118626NIH HHS S10 OD016262NIH HHS S10 OD018499
6 · The paper itself

Abstract

Accumulating evidence demonstrates that CD8+ T cells contribute to protection from severe dengue virus (DENV) disease and vaccine efficacy. Nevertheless, molecular programs associated with DENV-specific CD8+ T cell subsets have not been defined. Here, we studied the transcriptomic profiles of human DENV-specific CD8+ T cells isolated after stimulation with DENV epitopes from donors who had been infected with DENV multiple times and would therefore be expected to have significant levels of adaptive immunity. We found that DENV-specific CD8+ T cells mainly consisted of effector memory subsets, namely CD45RA-CCR7- effector memory (Tem) and CD45RA+CCR7- effector memory re-expressing CD45RA (Temra) cells, which enacted specific gene expression profiles upon stimulation with cognate antigens. DENV-specific CD8+ T cell subsets in general, and Temra cells in particular, were fully activated and polyfunctional, yet associated with relatively narrow transcriptional responses. Furthermore, we found that DENV-specific CD8+ Tem and Temra cells showed some unique T cell receptor features in terms of overlap and variable (V) gene usage. This study provides a transcriptomic definition of DENV-specific activated human CD8+ T cell subsets and defines a benchmark profile that vaccine-specific responses could aim to reproduce.

Indexed as

AdolescentAdultAgedCD8-Positive T-LymphocytesDengueDengue VirusFemaleHumansImmunologic MemoryLeukocyte Common AntigensMaleMiddle AgedReceptors, Antigen, T-CellReceptors, CCR7T-Lymphocyte SubsetsTranscriptomeCCR7 protein, humanLeukocyte Common AntigensReceptors, Antigen, T-CellReceptors, CCR7Adaptive immunityBioinformaticsImmunologyInfectious diseaseT cells

Identifiers

PMID30882366
PMCPMC6436856
OpenAlexW2921030702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.