Evidence map›Paper›PMID 30881478›Full record

ArticleNature physics2018

Entropic effects in cell lineage tree packings.

Jasmin Imran Alsous, Paul Villoutreix, Norbert Stoop, Stanislav Y Shvartsman, Jӧrn Dunkel

Abstract read
In one paragraph

Article in Nature physics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Size scaling in collective cell growth.Development (Cambridge, England) · 2021
    Article
  9. Cytokinetic abscission is part of the midblastula transition in early zebrafish embryogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Dynamics of hydraulic and contractile wave-mediated fluid transport duringProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Tissue topography steers migratingScience (New York, N.Y.) · 2020
    Article
  12. Article
  13. Article
  14. Embryonic Inversion inPhysical review. E · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jasmin Imran AlsousDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.
Paul VilloutreixThe Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
Norbert StoopDepartment of Mathematics, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139-4307.
Stanislav Y ShvartsmanDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.
Jӧrn DunkelDepartment of Mathematics, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139-4307.

Funding

Dynamics of epithelial morphogenesisR01GM107103 · NIGMS · PRINCETON UNIVERSITY · PI SHVARTSMAN, STANISLAV Y. · 2014 to 2017
$1.2M
NIGMS NIH HHS R01 GM107103
6 · The paper itself

Abstract

Optimal packings [1, 2] of unconnected objects have been studied for centuries [3-6], but the packing principles of linked objects, such as topologically complex polymers [7, 8] or cell lineages [9, 10], are yet to be fully explored. Here, we identify and investigate a generic class of geometrically frustrated tree packing problems, arising during the initial stages of animal development when interconnected cells assemble within a convex enclosure [10]. Using a combination of 3D imaging, computational image analysis, and mathematical modelling, we study the tree packing problem in Drosophila egg chambers, where 16 germline cells are linked by cytoplasmic bridges to form a branched tree. Our imaging data reveal non-uniformly distributed tree packings, in agreement with predictions from energy-based computations. This departure from uniformity is entropic and affects cell organization during the first stages of the animal's development. Considering mathematical models of increasing complexity, we investigate spherically confined tree packing problems on convex polyhedrons [11] that generalize Platonic and Archimedean solids. Our experimental and theoretical results provide a basis for understanding the principles that govern positional ordering in linked multicellular structures, with implications for tissue organization and dynamics [12, 13].

Identifiers

PMID30881478
PMCPMC6419958

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.