Evidence map›Paper›PMID 30879887›Full record

ArticleStructure (London, England : 1993)2019

Surface-Binding to Cardiolipin Nanodomains Triggers Cytochrome c Pro-apoptotic Peroxidase Activity via Localized Dynamics.

Mingyue Li, Abhishek Mandal, Vladimir A Tyurin, Maria DeLucia, Jinwoo Ahn, Valerian E Kagan, Patrick C A van der Wel

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Composition of the CytochromeMolecules (Basel, Switzerland) · 2023
    Article
  11. Specific Lipid Studies in Complex Membranes by Solid-State NMR Spectroscopy.Chemistry (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  12. Alkaline State of the Domain-Swapped Dimer of Human CytochromeJournal of the American Chemical Society · 2022
    Article
  13. Connecting aging biology and inflammation in the omics era.The Journal of clinical investigation · 2022
    Review
  14. Redox Pioneer: Professor Valerian Kagan.Antioxidants & redox signaling · 2022
    Article
  15. Review
  16. Article
  17. NMR identification of a conserved Drp1 cardiolipin-binding motif essential for stress-induced mitochondrial fission.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Binding of S. cerevisiae iso-1 cytochrome c and its surface lysine-to-alanine variants to cardiolipin: charge effects and the role of the lipid to protein ratio.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mingyue LiDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Abhishek MandalDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Vladimir A TyurinDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Maria DeLuciaDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Jinwoo AhnDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Valerian E KaganDepartment of Environmental and Occupational Health, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Pharmacology and Chemical Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Radiation Oncology, University of Pittsburgh, Pittsburgh, PA 15213, USA; Center for Free Radical and Antioxidant Health, University of Pittsburgh, Pittsburgh, PA 15213, USA; Laboratory of Navigational Redox Lipidomics, IM Sechenov Moscow State Medical University, Moscow 119146, Russian Federation.
Patrick C A van der WelDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15213, USA; Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands. Electronic address: p.c.a.van.der.wel@rug.nl.

Funding

Training and EducationU19AI068021 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GREENBERGER, JOEL S · 2005 to 2019
$44.4M
Regulation of Cardiolin Byosynthesis in Epithelial InjuryP01HL114453 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MALLAMPALLI, RAMA K · 2014 to 2023
$21.3M
750MHz Wide Bore NMR SpectrometerS10OD012213 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GRONENBORN, ANGELA M. · 2013 to 2013
$2.0M
The molecular basis of cardiolipin-protein interactions implicated in intrinsic apoptosisR01GM113908 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAGAN, VALERIAN E · 2016 to 2019
$1.5M
NHLBI NIH HHS P01 HL114453NIAID NIH HHS U19 AI068021NIGMS NIH HHS R01 GM113908NIH HHS S10 OD012213
6 · The paper itself

Abstract

The peroxidation of cardiolipins by reactive oxygen species, which is regulated and enhanced by cytochrome c (cyt c), is a critical signaling event in mitochondrial apoptosis. We probe the molecular underpinnings of this mitochondrial death signal through structural and functional studies of horse heart cyt c binding to mixed-lipid membranes containing cardiolipin with mono- and polyunsaturated acyl chains. Lipidomics reveal the selective oxidation of polyunsaturated fatty acid (PUFA) cardiolipin (CL), while multidimensional solid-state NMR probes the structure and dynamics of the membrane and the peripherally bound protein. The hydrophilic milieu at the membrane interface stabilizes a native-like fold, but also leads to localized flexibility at the membrane-interacting protein face. PUFA CL acts as both a preferred substrate and a dynamic regulator by affecting the dynamics of the cyt c N70-I85 Ω loop, which covers the heme cavity.

Indexed as

ApoptosisLipidomicsAnimalsCardiolipinsCell MembraneCytochromes cFatty Acids, UnsaturatedHemeHorsesMagnetic Resonance SpectroscopyMyocardiumNanotechnologyOxygenPeroxidasesProtein ConformationProtein DomainsCardiolipinsCytochromes cFatty Acids, UnsaturatedHemeOxygenPeroxidasesapoptosiscardiolipincytochrome clipidomicsmembrane oxidationmembrane proteinmitochondrial proteinprotein structure and dynamicsPUFAsolid-state NMR

Identifiers

PMID30879887
PMCPMC6615723

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.