Evidence map›Paper›PMID 30879645›Full record

ArticleBiophysical journal2019

A Nondimensional Model Reveals Alterations in Nuclear Mechanics upon Hepatitis C Virus Replication.

Sreenath Balakrishnan, Suma S Mathad, Geetika Sharma, Shilpa R Raju, Uma B Reddy, Saumitra Das, G K Ananthasuresh

Abstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Stochastic dynamics of Type-I interferon responses.PLoS computational biology · 2022
    Article
  5. Particle uptake driven phagocytosis in macrophages and neutrophils enhances bacterial clearance.Journal of controlled release : official journal of the Controlled Release Society · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sreenath BalakrishnanBioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Suma S MathadMechanical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Geetika SharmaMicrobiology and Cell Biology, Indian Institute of Science, Bengaluru, Karnataka, India.
Shilpa R RajuMechanical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Uma B ReddyMicrobiology and Cell Biology, Indian Institute of Science, Bengaluru, Karnataka, India.
Saumitra DasBioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India; Microbiology and Cell Biology, Indian Institute of Science, Bengaluru, Karnataka, India. Electronic address: sdas@iisc.ac.in.
G K AnanthasureshBioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India; Mechanical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India. Electronic address: suresh@iisc.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Morphology of the nucleus is an important regulator of gene expression. Nuclear morphology is in turn a function of the forces acting on it and the mechanical properties of the nuclear envelope. Here, we present a two-parameter, nondimensional mechanical model of the nucleus that reveals a relationship among nuclear shape parameters, such as projected area, surface area, and volume. Our model fits the morphology of individual nuclei and predicts the ratio between forces and modulus in each nucleus. We analyzed the changes in nuclear morphology of liver cells due to hepatitis C virus (HCV) infection using this model. The model predicted a decrease in the elastic modulus of the nuclear envelope and an increase in the pre-tension in cortical actin as the causes for the change in nuclear morphology. These predictions were validated biomechanically by showing that liver cells expressing HCV proteins possessed enhanced cellular stiffness and reduced nuclear stiffness. Concomitantly, cells expressing HCV proteins showed downregulation of lamin-A,C and upregulation of β-actin, corroborating the predictions of the model. Our modeling assumptions are broadly applicable to adherent, monolayer cell cultures, making the model amenable to investigate changes in nuclear mechanics due to other stimuli by merely measuring nuclear morphology. Toward this, we present two techniques, graphical and numerical, to use our model for predicting physical changes in the nucleus.

Indexed as

Elastic ModulusModels, TheoreticalVirus ReplicationActinsCell Line, TumorHepacivirusHepatocytesHumansLamin Type ANuclear EnvelopeActinsLamin Type A

Identifiers

PMID30879645
PMCPMC6451028

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.