Evidence map›Paper›PMID 30879638›Full record

ArticleAmerican journal of human genetics2019

Deleterious Variation in BRSK2 Associates with a Neurodevelopmental Disorder.

Susan M Hiatt, Michelle L Thompson, Jeremy W Prokop, James M J Lawlor, David E Gray, E Martina Bebin, Tuula Rinne, Marlies Kempers, Rolph Pfundt, Bregje W van Bon and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

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  12. Dynamic Regulation ofInternational journal of molecular sciences · 2023
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  14. Three generation families: Analysis of de novo variants in autism.European journal of human genetics : EJHG · 2023
    Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 5 countries.

Susan M HiattHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Michelle L ThompsonHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Jeremy W ProkopDepartment of Pediatrics and Human Development, Michigan State University, East Lansing, MI 48824, USA.
James M J LawlorHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
David E GrayHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
E Martina BebinDepartment of Neurology, University of Alabama Birmingham, Birmingham, AL 35294, USA.
Tuula RinneDepartment of Human Genetics, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Marlies KempersDepartment of Human Genetics, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Bregje W van BonDepartment of Human Genetics, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Cyril MignotDépartement de Génétique, Groupe Hospitalier Pitié-Salpêtrière, Assistance Publique - Hôpitaux de Paris, Paris 75013, France; Centres de Référence Maladies Rares, Déficiences Intellectuelles de Causes Rares, Paris 75013, France; Groupes de Recherche Clinique Paris Sorbonne Déficience Intellectuelle et Autisme, Paris 75013, France.
Caroline NavaDépartement de Génétique, Groupe Hospitalier Pitié-Salpêtrière, Assistance Publique - Hôpitaux de Paris, Paris 75013, France; Faculté de Médecine, Institut du Cerveau et de la Moelle épinière, Sorbonne Université, Paris 75013, France.
Christel DepienneFaculté de Médecine, Institut du Cerveau et de la Moelle épinière, Sorbonne Université, Paris 75013, France; Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen, Essen 45147, Germany.
Louisa KalsnerConnecticut Children's Medical Center, Farmington, CT 06032, USA.
Anita RauchInstitute of Medical Genetics, University of Zurich, Schlieren 8952, Switzerland; Radiz-Rare Disease Initiative Zurich, Clinical Research Priority Program, University of Zurich, Zurich 8032, Switzerland.
Pascal JosetInstitute of Medical Genetics, University of Zurich, Schlieren 8952, Switzerland.
Ruxandra Bachmann-GagescuInstitute of Medical Genetics, University of Zurich, Schlieren 8952, Switzerland.
Ingrid M WentzensenGeneDx, Gaithersburg, MD 20877, USA.
Kirsty McWalterGeneDx, Gaithersburg, MD 20877, USA.
Gregory M CooperHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA. Electronic address: gcooper@hudsonalpha.org.
HudsonAlpha Institute for Biotechnology · USRadboud University Nijmegen · NLSorbonne Université · FRUniversity of Zurich · CHConnecticut Children's Medical Center · USMichigan State University · USUniversity of Alabama at Birmingham · US

Funding

Genomic Diagnosis in Children with Developmental DelayUM1HG007301 · NHGRI · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI COOPER, GREGORY MICHAEL, MYERS, RICHARD M · 2013 to 2016
$7.5M
Using a Sequence-to-Structure-to-Function Approach to Functionally Characterize Protein Coding Missense Mutations in the Human and Rat GenomesK01ES025435 · NIEHS · MICHIGAN STATE UNIVERSITY · PI PROKOP, JEREMY WILLIAM · 2014 to 2018
$489k
NHGRI NIH HHS UM1 HG007301NIEHS NIH HHS K01 ES025435
6 · The paper itself

Abstract

Developmental delay and intellectual disability (DD and ID) are heterogeneous phenotypes that arise in many rare monogenic disorders. Because of this rarity, developing cohorts with enough individuals to robustly identify disease-associated genes is challenging. Social-media platforms that facilitate data sharing among sequencing labs can help to address this challenge. Through one such tool, GeneMatcher, we identified nine DD- and/or ID-affected probands with a rare, heterozygous variant in the gene encoding the serine/threonine-protein kinase BRSK2. All probands have a speech delay, and most present with intellectual disability, motor delay, behavioral issues, and autism. Six of the nine variants are predicted to result in loss of function, and computational modeling predicts that the remaining three missense variants are damaging to BRSK2 structure and function. All nine variants are absent from large variant databases, and BRSK2 is, in general, relatively intolerant to protein-altering variation among humans. In all six probands for whom parents were available, the mutations were found to have arisen de novo. Five of these de novo variants were from cohorts with at least 400 sequenced probands; collectively, the cohorts span 3,429 probands, and the observed rate of de novo variation in these cohorts is significantly higher than the estimated background-mutation rate (p = 2.46 × 10

Indexed as

Gene DeletionAdolescentAutistic DisorderChildChild Behavior DisordersChild, PreschoolDevelopmental DisabilitiesExomeExome SequencingFemaleGenetic Predisposition to DiseaseGenetic VariationHeterozygoteHumansIntellectual DisabilityMaleBrsk2 protein, humanProtein Serine-Threonine KinasesBRSK2clinical sequencingde novodevelopmental delayexomegenomeintellectual disabilityMendelian disease

Identifiers

PMID30879638
PMCPMC6451696
OpenAlexW2922519375

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.