Evidence map›Paper›PMID 30877999›Full record

ArticleiScience2019

Context-Specific Requirement of Forty-Four Two-Component Loci in Pseudomonas aeruginosa Swarming.

Ameen M Kollaran, Shubham Joge, Harshitha S Kotian, Divakar Badal, Deep Prakash, Ayushi Mishra, Manoj Varma, Varsha Singh

Abstract read
In one paragraph

Article in iScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Modulatory Effects ofPharmaceuticals (Basel, Switzerland) · 2025
    Article
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  7. Article
  8. Suppression ofiScience · 2024
    Article
  9. Evaluation of Expanded 2-Aminobenzothiazole Library for Inhibition ofbioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Swarming ofBiophysics reviews · 2023
    Review
  12. Article
  13. Sensor histidine kinasesFrontiers in cellular and infection microbiology · 2023
    Article
  14. Article
  15. BosR: A novel biofilm-specific regulator inFrontiers in microbiology · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ameen M KollaranDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Shubham JogeDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Harshitha S KotianCentre for Nano Science and Engineering, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Divakar BadalBiosystems Science and Engineering, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Deep PrakashDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Ayushi MishraDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Manoj VarmaCentre for Nano Science and Engineering, Indian Institute of Science, Bangalore, Karnataka 560012, India; Robert Bosch Centre for Cyber Physical Systems, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Varsha SinghDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, Karnataka 560012, India; Biosystems Science and Engineering, Indian Institute of Science, Bangalore, Karnataka 560012, India. Electronic address: varsha@iisc.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Swarming in Pseudomonas aeruginosa is a coordinated movement of bacteria over semisolid surfaces (0.5%-0.7% agar). On soft agar, P. aeruginosa exhibits a dendritic swarm pattern, with multiple levels of branching. However, the swarm patterns typically vary depending upon the experimental design. In the present study, we show that the pattern characteristics of P. aeruginosa swarm are highly environment dependent. We define several quantifiable, macroscale features of the swarm to study the plasticity of the swarm, observed across different nutrient formulations. Furthermore, through a targeted screen of 113 two-component system (TCS) loci of the P. aeruginosa strain PA14, we show that forty-four TCS genes regulate swarming in PA14 in a contextual fashion. However, only four TCS genes-fleR, fleS, gacS, and PA14_59770-were found essential for swarming. Notably, many swarming-defective TCS mutants were found highly efficient in biofilm formation, indicating opposing roles for many TCS loci.

Indexed as

Biological SciencesMicrobiologyPathogenic Organism

Identifiers

PMID30877999
PMCPMC6423354

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.