Evidence map›Paper›PMID 30877195›Full record

ArticleThe Journal of biological chemistry2019

Lysosomal targeting of the ABC transporter TAPL is determined by membrane-localized charged residues.

Philipp Graab, Christoph Bock, Konstantin Weiss, Alexander Hirth, Nicole Koller, Markus Braner, Jennifer Jung, Frank Loehr, Robert Tampé, Christian Behrends and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  4. Interdomain communication in a homodimeric ABC transporter.The Journal of biological chemistry · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 3 countries.

Philipp GraabFrom the Institute of Biochemistry, Biocenter, and.
Christoph BockFrom the Institute of Biochemistry, Biocenter, and.
Konstantin WeissFrom the Institute of Biochemistry, Biocenter, and.
Alexander HirthFrom the Institute of Biochemistry, Biocenter, and.
Nicole KollerFrom the Institute of Biochemistry, Biocenter, and.
Markus BranerFrom the Institute of Biochemistry, Biocenter, and.
Jennifer Jungthe Institute of Biochemistry II, Medical School, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany, and.
Frank Loehrthe Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Max-von-Laue-Strasse 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-6399-9497
Robert TampéFrom the Institute of Biochemistry, Biocenter, and.ORCID 0000-0002-0403-2160
Christian Behrendsthe Institute of Biochemistry II, Medical School, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany, and.
Rupert AbeleFrom the Institute of Biochemistry, Biocenter, and abele@em.uni-frankfurt.de.ORCID 0000-0001-6899-293X
Goethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human lysosomal polypeptide ABC transporter TAPL (ABC subfamily B member 9, ABCB9) transports 6-59-amino-acid-long polypeptides from the cytosol into lysosomes. The subcellular localization of TAPL depends solely on its N-terminal transmembrane domain, TMD0, which lacks conventional targeting sequences. However, the intracellular route and the molecular mechanisms that control TAPL localization remain unclear. Here, we delineated the route of TAPL to lysosomes and investigated the determinants of single trafficking steps. By synchronizing trafficking events by a retention using selective hooks (RUSH) assay and visualizing individual intermediate steps through immunostaining and confocal microscopy, we demonstrate that TAPL takes the direct route to lysosomes. We further identified conserved charged residues within TMD0 transmembrane helices that are essential for individual steps of lysosomal targeting. Substitutions of these residues retained TAPL in the endoplasmic reticulum (ER) or Golgi. We also observed that for release from the ER, a salt bridge between Asp-17 and Arg-57 is essential. An interactome analysis revealed that Yip1-interacting factor homolog B membrane-trafficking protein (YIF1B) interacts with TAPL. We also found that YIF1B is involved in ER-to-Golgi trafficking and interacts with TMD0 of TAPL via its transmembrane domain and that this interaction strongly depends on the newly identified salt bridge within TMD0. These results expand our knowledge about lysosomal trafficking of TAPL and the general function of extra transmembrane domains of ABC transporters.

Indexed as

ATP-Binding Cassette TransportersCell MembraneHeLa CellsHumansMolecular ChaperonesProtein BindingProtein FoldingProtein TransportSubcellular FractionsABCB9 protein, humanATP-Binding Cassette TransportersMolecular ChaperonesABC transporterATP-binding cassette subfamily B member 9 (ABCB9)intracellular traffickinglysosomepolypeptide transporterprotein-protein interactionprotein targetingTMD0transmembrane domainYip1-interacting factor homolog B membrane-trafficking protein (YIF1B)

Identifiers

PMID30877195
PMCPMC6509505
OpenAlexW2920861231

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.