Evidence map›Paper›PMID 30877080›Full record

ArticleG3 (Bethesda, Md.)2019

A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size.

John R Shorter, Paul L Maurizio, Timothy A Bell, Ginger D Shaw, Darla R Miller, Terry J Gooch, Jason S Spence, Leonard McMillan, William Valdar, Fernando Pardo-Manuel de Villena

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. KRAB zinc finger protein diversification drives mammalian interindividual methylation variability.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

John R ShorterDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.ORCID 0000-0003-4732-5526
Paul L MaurizioDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.ORCID 0000-0002-5859-6260
Timothy A BellDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
Ginger D ShawDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
Darla R MillerDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
Terry J GoochDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
Jason S SpenceDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
Leonard McMillanDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina, 27599-7265.
William ValdarDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265 william.valdar@unc.edu fernando@med.unc.edu.ORCID 0000-0002-2419-0430
Fernando Pardo-Manuel de VillenaDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina, 27599-7265 william.valdar@unc.edu fernando@med.unc.edu.ORCID 0000-0002-5738-5795

Funding

UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2006 to 2015
$31.0M
Postdoctoral Research in Neurodevelopmental DisordersT32HD040127 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BENJAMIN D PHILPOT, Mark D Shen · 2001 to 2026
$8.5M
An Interdisciplinary program for systems genomics of complex behaviorsP50MH090338 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PARDO-MANUEL DE VILLENA, FERNANDO · 2009 to 2010
$6.0M
Molecular Biology of Viral Diseases Predoctoral Training GrantT32AI007419 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Mark T Heise, CARY A MOODY · 1993 to 2026
$4.7M
Statistical Modeling of Multiparental and Genetic Reference PopulationsR35GM127000 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI William Valdar · 2018 to 2026
$3.1M
An Interdisciplinary program for systems genomics of complex behaviorsP50HG006582 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PARDO-MANUEL DE VILLENA, FERNANDO · 2011 to 2013
$2.6M
Collaborative Cross: A system genetics approach to the study of male infertilityR01HD065024 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI O'BRIEN, DEBORAH A., PARDO-MANUEL DE VILLENA, FERNANDO · 2010 to 2014
$1.7M
Statistical Modeling of Complex Traits in Genetic Reference Super-PopulationsR01GM104125 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VALDAR, WILLIAM · 2012 to 2016
$1.2M
NHGRI NIH HHS P50 HG006582NIAID NIH HHS T32 AI007419NICHD NIH HHS R01 HD065024NICHD NIH HHS T32 HD040127NIGMS NIH HHS P50 GM076468NIGMS NIH HHS R01 GM104125NIGMS NIH HHS R35 GM127000NIMH NIH HHS P50 MH090338
6 · The paper itself

Abstract

Reproductive success in the eight founder strains of the Collaborative Cross (CC) was measured using a diallel-mating scheme. Over a 48-month period we generated 4,448 litters, and provided 24,782 weaned pups for use in 16 different published experiments. We identified factors that affect the average litter size in a cross by estimating the overall contribution of parent-of-origin, heterosis, inbred, and epistatic effects using a Bayesian zero-truncated overdispersed Poisson mixed model. The phenotypic variance of litter size has a substantial contribution (82%) from unexplained and environmental sources, but no detectable effect of seasonality. Most of the explained variance was due to additive effects (9.2%) and parental sex (maternal

Indexed as

AllelesAnimals, Genetically ModifiedMaternal InheritanceAlgorithmsAnimalsCollaborative Cross MiceCrosses, GeneticEnvironmentFemaleGene-Environment InteractionGenetic TestingLitter SizeMaleMiceMice, Inbred StrainsModels, Geneticadditive heritabilityBayesDiallelF1 crossfertilityMPPMultiparent Advanced Generation Inter-Cross (MAGIC)multiparental populationsvariance projectionzero-truncated Poisson

Identifiers

PMID30877080
PMCPMC6505174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.