Evidence map›Paper›PMID 30875613›Full record

ArticleJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology2019

Prevalence and genetic diversity of viral gastroenteritis viruses in children younger than 5 years of age in Guatemala, 2014-2015.

Marta Diez-Valcarce, Maria Renee Lopez, Beatriz Lopez, Oneida Morales, Manuel Sagastume, Loren Cadena, Susan Kaydos-Daniels, Claudia Jarquin, John P McCracken, Joe P Bryan and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
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  10. Single-step RT-PCR assay for dual genotyping of GI and GII norovirus strains.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2021
    Article
  11. Sapovirus: an emerging cause of childhood diarrhea.Current opinion in infectious diseases · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Marta Diez-ValcarceOak Ridge Institute for Science and Education, Oak Ridge, TN, USA.
Maria Renee LopezUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Beatriz LopezUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Oneida MoralesUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Manuel SagastumeDepartment of Epidemiology, Ministry of Public Health and Social Welfare, Guatemala City, Guatemala.
Loren CadenaDivision of Global Health Protection, US Centers for Disease Control and Prevention, Atlanta, GA; Central American Regional Office, Centers for Disease Control and Prevention, Guatemala City, Guatemala.
Susan Kaydos-DanielsInfluenza Program, US Centers for Disease Control and Prevention, Guatemala City, Guatemala.
Claudia JarquinUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
John P McCrackenUniversidad del Valle de Guatemala, Guatemala City, Guatemala.
Joe P BryanDivision of Global Health Protection, US Centers for Disease Control and Prevention, Atlanta, GA; Central American Regional Office, Centers for Disease Control and Prevention, Guatemala City, Guatemala.
Jan VinjéDivision of Viral Diseases, US Centers for Disease Control and Prevention, Atlanta, GA, USA. Electronic address: jvinje@cdc.gov.
Universidad del Valle de Guatemala · GTCenters for Disease Control and Prevention · USMinistry of Public Health and Social Assistance · GTOak Ridge Associated Universities · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

backgroundAcute diarrhea is an important cause of morbidity and mortality in children and is associated with approximately 500,000 deaths/year globally. Rotavirus and norovirus are leading causes of acute diarrhea accounting for more than half of this burden. OBJECTIVE/STUDY

designTo determine the prevalence and genotype distribution of acute diarrhea caused by rotavirus, norovirus, sapovirus and astrovirus among children <5 years of age at two departments in Guatemala from January 2014 to December 2015, we tested 471 stool specimens (202 samples from hospitalized children and 269 samples from children in ambulatory clinics) by real-time reverse transcription-PCR and genotyped positive samples.

resultsRotavirus was detected in 20.4%, norovirus in 18.5%, sapovirus in 7% and astrovirus in 4.2% of the samples. Co-infection of rotavirus and norovirus was found in 2.6% of the samples. Most norovirus (87.4%) and rotavirus (81.3%) infections were detected in children in the 6-12 months age group. The proportion of patients with rotavirus (34%) and norovirus (23%) was higher in hospitalized patients compared to ambulatory patients, whereas the prevalence of sapovirus and astrovirus was similar in both settings. Of the 40 genotyped norovirus strains, 62.5% were GII.4 and 15% GII.3. Sapovirus genotypes included GI.1 (15.4%), GII.2 (15.4%), GII.5 (38.5%) and GIV.1 (30.8%).

conclusionsOur data demonstrate that in 2014-2015, gastroenteritis viruses account for 50% of acute diarrhea in children younger than 5 years of age in Guatemala, highlighting the importance of continuous surveillance to guide impact of the current rotavirus vaccine and formulation of future norovirus vaccines.

Indexed as

Genetic VariationAcute DiseaseChild, PreschoolDiarrheaFecesFemaleGastroenteritisGenotypeGuatemalaHumansInfantInfant, NewbornMalePhylogenyPrevalenceRNA VirusesAstrovirusDiarrheaGenotypesGuatemalaNorovirusRotavirusSapovirusViral gastroenteritis

Identifiers

PMID30875613
PMCPMC8981267
OpenAlexW2922137944

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.