Evidence map›Paper›PMID 30874617›Full record

ArticleScientific reports2019

Copy number alterations in B-cell development genes, drug resistance, and clinical outcome in pediatric B-cell precursor acute lymphoblastic leukemia.

Elisabeth M P Steeghs, Judith M Boer, Alex Q Hoogkamer, Aurélie Boeree, Valerie de Haas, Hester A de Groot-Kruseman, Martin A Horstmann, Gabriele Escherich, Rob Pieters, Monique L den Boer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

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  16. Comprehensive detection ofFrontiers in molecular biosciences · 2024
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  18. Observational
  19. The Prognostic Effect ofHemaSphere · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Elisabeth M P SteeghsDepartment of Pediatric Oncology/Hematology, Erasmus Medical Center - Sophia Children's Hospital, Rotterdam, The Netherlands.
Judith M BoerDepartment of Pediatric Oncology/Hematology, Erasmus Medical Center - Sophia Children's Hospital, Rotterdam, The Netherlands.
Alex Q HoogkamerDepartment of Pediatric Oncology/Hematology, Erasmus Medical Center - Sophia Children's Hospital, Rotterdam, The Netherlands.
Aurélie BoereeDepartment of Pediatric Oncology/Hematology, Erasmus Medical Center - Sophia Children's Hospital, Rotterdam, The Netherlands.
Valerie de HaasDCOG, Dutch Childhood Oncology Group, The Hague, The Netherlands.
Hester A de Groot-KrusemanDCOG, Dutch Childhood Oncology Group, The Hague, The Netherlands.
Martin A HorstmannCOALL - German Cooperative Study Group for Childhood Acute Lymphoblastic Leukemia, University Medical Centre Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany.
Gabriele EscherichCOALL - German Cooperative Study Group for Childhood Acute Lymphoblastic Leukemia, University Medical Centre Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany.
Rob PietersPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Monique L den BoerDepartment of Pediatric Oncology/Hematology, Erasmus Medical Center - Sophia Children's Hospital, Rotterdam, The Netherlands. m.l.denboer@prinsesmaximacentrum.nl.
Erasmus MC - Sophia Children’s Hospital · NLStichting Kinderoncologie Nederland · NLUniversität Hamburg · DEUniversity Medical Center Hamburg-Eppendorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pediatric B-cell precursor acute lymphoblastic leukemia (BCP-ALL) is associated with a high frequency of copy number alterations (CNAs) in IKZF1, EBF1, PAX5, CDKN2A/B, RB1, BTG1, ETV6, and/or the PAR1 region (henceforth: B-cell development genes). We aimed to gain insight in the association between CNAs in these genes, clinical outcome parameters, and cellular drug resistance. 71% of newly diagnosed pediatric BCP-ALL cases harbored one or more CNAs in these B-cell development genes. The distribution and clinical relevance of these CNAs was highly subtype-dependent. In the DCOG-ALL10 cohort, only loss of IKZF1 associated as single marker with unfavorable outcome parameters and cellular drug resistance. Prednisolone resistance was observed in IKZF1-deleted primary high hyperdiploid cells (~1500-fold), while thiopurine resistance was detected in IKZF1-deleted primary BCR-ABL1-like and non-BCR-ABL1-like B-other cells (~2.7-fold). The previously described risk stratification classifiers, i.e. IKZF1

Indexed as

AdolescentB-LymphocytesChildChild, PreschoolCohort StudiesDNA Copy Number VariationsDrug ResistanceETS Translocation Variant 6 ProteinFemaleGene DosageGenes, p16HumansIkaros Transcription FactorMaleNeoplasm ProteinsPAX5 Transcription FactorBTG1 protein, humanEBF1 protein, humanETS Translocation Variant 6 ProteinIkaros Transcription FactorIKZF1 protein, humanNeoplasm ProteinsPAX5 protein, humanPAX5 Transcription FactorProto-Oncogene Proteins c-etsRB1 protein, humanRepressor ProteinsRetinoblastoma Binding ProteinsTrans-ActivatorsUbiquitin-Protein Ligases

Identifiers

PMID30874617
PMCPMC6420659
OpenAlexW2922500791

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.