Evidence map›Paper›PMID 30874556›Full record

ArticleNature communications2019

LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation.

Prabhjot Kaur, Marvin Rausch, Basanti Malakar, Uchenna Watson, Nikhil P Damle, Yogesh Chawla, Sandhya Srinivasan, Kanika Sharma, Tanja Schneider, Gagan Deep Jhingan and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. A lipid cue drives the subcellular localization of a self-inserting bacterial transmembrane protein.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  16. SigE: A master regulator ofFrontiers in microbiology · 2023
    Review
  17. Article
  18. MiaA (Rv2727c) mediated tRNA isopentenylation ofMolecular biology research communications · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Prabhjot KaurNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Marvin RauschInstitute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, 53105, Germany.ORCID http://orcid.org/0000-0003-1562-4337
Basanti MalakarNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Uchenna WatsonDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bengaluru, 560012, India.
Nikhil P DamleNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Yogesh ChawlaNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Sandhya SrinivasanVproteomics, Valerian Chem Private Limited, Green Park Main, New Delhi, 110016, India.
Kanika SharmaVproteomics, Valerian Chem Private Limited, Green Park Main, New Delhi, 110016, India.
Tanja SchneiderInstitute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, 53105, Germany.
Gagan Deep JhinganVproteomics, Valerian Chem Private Limited, Green Park Main, New Delhi, 110016, India.
Deepak SainiDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bengaluru, 560012, India.
Debasisa MohantyNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India.
Fabian GreinInstitute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, 53105, Germany.ORCID http://orcid.org/0000-0001-8394-8961
Vinay Kumar NandicooriNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, 110067, India. vinaykn@nii.ac.in.ORCID http://orcid.org/0000-0002-5682-4178
National Institute of Immunology · INUniversity of Bonn · DEIndian Institute of Science Bangalore · INCornell University · USUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mycobacterium tuberculosis kinase PknB is essential for growth and survival of the pathogen in vitro and in vivo. Here we report the results of our efforts to elucidate the mechanism of regulation of PknB activity. The specific residues in the PknB extracytoplasmic domain that are essential for ligand interaction and survival of the bacterium are identified. The extracytoplasmic domain interacts with mDAP-containing LipidII, and this is abolished upon mutation of the ligand-interacting residues. Abrogation of ligand-binding or sequestration of the ligand leads to aberrant localization of PknB. Contrary to the prevailing hypothesis, abrogation of ligand-binding is linked to activation loop hyperphosphorylation, and indiscriminate hyperphosphorylation of PknB substrates as well as other proteins, ultimately causing loss of homeostasis and cell death. We propose that the ligand-kinase interaction directs the appropriate localization of the kinase, coupled to stringently controlled activation of PknB, and consequently the downstream processes thereof.

Indexed as

HomeostasisLigandsMutationMycobacterium tuberculosisPhosphorylationProtein BindingProtein DomainsProtein Serine-Threonine KinasesUridine Diphosphate N-Acetylmuramic AcidLigandsmuramyl-NAc-(pentapeptide)pyrophosphoryl-undecaprenolPknB protein, Mycobacterium tuberculosisProtein Serine-Threonine KinasesUridine Diphosphate N-Acetylmuramic Acid

Identifiers

PMID30874556
PMCPMC6428115
OpenAlexW2922262361

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.