Evidence map›Paper›PMID 30873710›Full record

ReviewGenes, chromosomes & cancer2019

Higher order genomic organization and epigenetic control maintain cellular identity and prevent breast cancer.

A J Fritz, N E Gillis, D L Gerrard, P D Rodriguez, D Hong, J T Rose, P N Ghule, E L Bolf, J A Gordon, C E Tye and 12 more

Open access · greenAbstract readReview
In one paragraph

Review in Genes, chromosomes & cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

A J FritzDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.ORCID 0000-0002-2220-9943
N E GillisUniversity of Vermont Cancer Center, Burlington, Vermont.
D L GerrardCellular Molecular Biomedical Sciences Program, University of Vermont, Burlington, Vermont.
P D RodriguezCellular Molecular Biomedical Sciences Program, University of Vermont, Burlington, Vermont.
D HongDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, Massachusetts.
J T RoseDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
P N GhuleDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
E L BolfUniversity of Vermont Cancer Center, Burlington, Vermont.
J A GordonDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
C E TyeDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
J R BoydDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
K M TracyDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
J A NickersonDivision of Genes and Development of the Department of Pediatrics, University of Massachusetts Medical School, Worcester, Massachusetts.
A J van WijnenOrthopedic Surgery and Biochemistry and Molecular Biology, Mayo Clinic Minnesota, Rochester, Minnesota.
A N ImbalzanoDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts.
J L HeathDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
S E FrietzeCellular Molecular Biomedical Sciences Program, University of Vermont, Burlington, Vermont.
S K ZaidiDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
F E CarrDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
J B LianDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
J L SteinDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.
G S SteinDepartment of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, Vermont.ORCID 0000-0001-8762-5422
University of Vermont · USUniversity of Massachusetts Chan Medical School · USDana-Farber Cancer Institute · USMayo Clinic · US

Funding

Understanding Factors Influencing COVID-19 Testing and Vaccination in Immigrant Low-income and Homeless Populations and Testing Targeted InterventionsU54GM115516 · NIGMS · MAINEHEALTH · PI CLIFFORD JAMES ROSEN · 2017 to 2026
$51.6M
SUBNUCLEAR TARGETING OF TRANSCRIPTION FACTORSP01CA082834 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEIN, GARY S. · 2001 to 2015
$18.4M
Systems Analysis of Epigenomic Architecture in Cancer ProgressionU54CA217297 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WANG, QIANBEN · 2017 to 2021
$9.3M
Vermont Immunology/Infectious Diseases CenterP30GM118228 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2021
$6.8M
Vermont Breast Cancer Molecular Characterization LaboratoryU01CA196383 · NCI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI SPRAGUE, BRIAN L, STEIN, JANET L · 2015 to 2020
$5.4M
Synthesis of Osteocalcin in BoneR37DE012528 · NIDCR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LIAN, JANE B. · 2008 to 2017
$5.0M
Vermont Immunology/Infectious Diseases Training GrantT32AI055402 · NIAID · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI GARY E WARD · 2005 to 2026
$2.7M
Deciphering the molecular mechanisms of histone code recognition by ATAD2/BR01GM129338 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI FRIETZE, SETH E, GLASS, KAREN CHAMPAGNE · 2018 to 2022
$2.1M
Understanding Ikaros molecular functions for targeted therapies of pre-B ALLR01CA230618 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRIETZE, SETH E, SCHJERVEN, HILDE · 2018 to 2022
$1.8M
Cell Cycle Regulation of Histone Gene ExpressionR01CA139322 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEIN, GARY S. · 2009 to 2013
$1.6M
Synthesis of Osteocalcin in BoneR56DE012528 · NIDCR · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI LIAN, JANE B., STEIN, GARY S. · 2018 to 2018
$427k
Supplement to AWD000033276 - Tracy fellowship - childcare costsF32CA236125 · NCI · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI TRACY, KIRSTEN · 2019 to 2022
$229k
NCI NIH HHS 1F32 CA220935NCI NIH HHS 1F32CA236125NCI NIH HHS 1U54CA217297NCI NIH HHS F32 CA220935NCI NIH HHS P01 CA082834NCI NIH HHS R01 CA139322NCI NIH HHS R01 CA230618NCI NIH HHS R37 DE012528NCI NIH HHS U01 CA196383NIAID NIH HHS T32 AI055402NIDCR NIH HHS R37 DE012528NIDCR NIH HHS R56 DE012528NIGMS NIH HHS P30 GM118228NIGMS NIH HHS R01 GM129338NIGMS NIH HHS R01GM129338NIGMS NIH HHS U54 GM115516
6 · The paper itself

Abstract

Cells establish and sustain structural and functional integrity of the genome to support cellular identity and prevent malignant transformation. In this review, we present a strategic overview of epigenetic regulatory mechanisms including histone modifications and higher order chromatin organization (HCO) that are perturbed in breast cancer onset and progression. Implications for dysfunctions that occur in hormone regulation, cell cycle control, and mitotic bookmarking in breast cancer are considered, with an emphasis on epithelial-to-mesenchymal transition and cancer stem cell activities. The architectural organization of regulatory machinery is addressed within the contexts of translating cancer-compromised genomic organization to advances in breast cancer risk assessment, diagnosis, prognosis, and identification of novel therapeutic targets with high specificity and minimal off target effects.

Indexed as

AnimalsBreast NeoplasmsCell Line, TumorChromatinEpigenesis, GeneticEpithelial-Mesenchymal TransitionFemaleGenomeHumansMiceNeoplastic Stem CellsChromatinbreast cancercancer stem cellsepithelial to mesenchymal transitionhigher order chromatin organizationhormone regulationmitotic bookmarkingRUNX

Identifiers

PMID30873710
PMCPMC6549233
OpenAlexW2921903133

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.