Evidence map›Paper›PMID 30872949›Full record

ArticleInternational journal of mass spectrometry2018

Comprehensive urinary metabolomic characterization of a genetically induced mouse model of prostatic inflammation.

Ling Hao, Yatao Shi, Samuel Thomas, Chad M Vezina, Sagar Bajpai, Arya Ashok, Charles J Bieberich, William A Ricke, Lingjun Li

Abstract read
In one paragraph

Article in International journal of mass spectrometry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. A Practical, Noninvasive Urine Collection Method for Mice for Large Cohort Preclinical Studies.Journal of the American Association for Laboratory Animal Science : JAALAS · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ling HaoSchool of Pharmacy, University of Wisconsin-Madison, WI, USA.
Yatao ShiSchool of Pharmacy, University of Wisconsin-Madison, WI, USA.
Samuel ThomasMolecular and Environmental Toxicology Center, University of Wisconsin-Madison, WI, USA.
Chad M VezinaMolecular and Environmental Toxicology Center, University of Wisconsin-Madison, WI, USA.
Sagar BajpaiDepartment of Biological Sciences, University of Maryland-Baltimore, MD, USA.
Arya AshokDepartment of Biological Sciences, University of Maryland-Baltimore, MD, USA.
Charles J BieberichDepartment of Biological Sciences, University of Maryland-Baltimore, MD, USA.
William A RickeSchool of Pharmacy, University of Wisconsin-Madison, WI, USA.
Lingjun LiSchool of Pharmacy, University of Wisconsin-Madison, WI, USA.
University of Wisconsin–Madison · USUniversity of Maryland, Baltimore · US

Funding

Role of Beta-Catenin in Urinary DysfunctionU54DK104310 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI RICKE, WILLIAM A · 2014 to 2023
$12.8M
Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
REPRODUCTIVE AND DEVELOPMENTAL TOXICITY OF DIOXINR01ES001332 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI PETERSON, RICHARD EUGENE, VEZINA, CHAD M. · 1985 to 2021
$5.3M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
Role of Inflammation and Epigenetics in Benign Prostate PathologyP20DK090921 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI BIEBERICH, CHARLES J. · 2010 to 2012
$876k
Urinary Biomarkers of Lower Urinary Traxct Symptoms (LUTS) in Men P20DK097826 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BUSHMAN, WADE A · 2012 to 2014
$776k
NCRR NIH HHS S10 RR029531NIDDK NIH HHS P20 DK090921NIDDK NIH HHS P20 DK097826NIDDK NIH HHS R01 DK071801NIDDK NIH HHS U54 DK104310NIEHS NIH HHS R01 ES001332
6 · The paper itself

Abstract

Dysfunction of the lower urinary tract commonly afflicts the middle-aged and aging male population. The etiology of lower urinary tract symptoms (LUTS) is multifactorial. Benign prostate hyperplasia, fibrosis, smooth muscle contractility, and inflammation likely contribute. Here we aim to characterize the urinary metabolomic profile associated with prostatic inflammation, which could inform future personalized diagnosis or treatment, as well as mechanistic research. Quantitative urinary metabolomics was conducted to examine molecular changes following induction of inflammation via conditional Interleukin-1β expression in prostate epithelia using a novel transgenic mouse strain. To advance method development for urinary metabolomics, we also compared different urine normalization methods and found that normalizing urine samples based on osmolality prior to LC-MS most completely separated urinary metabolite profiles of mice with and without prostate inflammation via principal component analysis. Global metabolomics was combined with advanced machine learning feature selection and classification for data analysis. Key dysregulated metabolites and pathways were identified and were relevant to prostatic inflammation, some of which overlapped with our previous study of human LUTS patients. A binary classification model was established via the support vector machine algorithm to accurately differentiate control and inflammation groups, with an area-under-the-curve value of the receiver operating characteristic of 0.81, sensitivity of 0.974 and specificity of 0.995, respectively. This study generated molecular profiles of non-bacterial prostatic inflammation, which could assist future efforts to stratify LUTS patients and develop new therapies.

Indexed as

InflammationLC-MSMetabolomicsNormalizationOsmolalitySupport vector machine

Identifiers

PMID30872949
PMCPMC6414212
OpenAlexW2892964827

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.