Evidence map›Paper›PMID 30871019›Full record

ArticleJournal of clinical medicine2019

Association of PTPN22 1858C/T Polymorphism with Autoimmune Diseases: A Systematic Review and Bayesian Approach.

Kalthoum Tizaoui, Seon Hui Kim, Gwang Hun Jeong, Andreas Kronbichler, Kwang Seob Lee, Keum Hwa Lee, Jae Il Shin

Abstract read
In one paragraph

Article in Journal of clinical medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
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  6. Is JAK Inhibitor A Therapeutic Option For Endometriosis?Journal of obstetrics and gynaecology of India · 2025
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  10. Genetic underpinnings of the psoriatic spectrum.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2023
    Article
  11. eLife · 2023
    Article
  12. Review
  13. Article
  14. Genetic Polymorphism ofMedicina (Kaunas, Lithuania) · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Association of the single nucleotide polymorphism C1858T of theInternational journal of reproductive biomedicine · 2021
    Article
  19. Article
  20. ANCA-Associated Vasculitis: An Update.Journal of clinical medicine · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kalthoum TizaouiDepartment of Basic Sciences, Division of Histology and Immunology, Faculty of Medicine Tunis, Tunis El Manar University, Tunis 1068, Tunisia. kalttizaoui@gmail.com.
Seon Hui KimSchool of Medicine, Kyungpook National University, Daegu 41944, Korea. poom528@gmail.com.
Gwang Hun JeongCollege of Medicine, Gyeongsang National University, Jinju 52727, Korea. pearlmed15@gmail.com.
Andreas KronbichlerDepartment of Internal Medicine IV (Nephrology and Hypertension), Medical University Innsbruck, 6020 Innsbruck, Austria. andreas.kronbichler@i-med.ac.at.ORCID 0000-0002-2945-2946
Kwang Seob LeeSeverance Hospital, Yonsei University College of Medicine, Seoul 03722, Korea. KWANGSEOB@yuhs.ac.
Keum Hwa LeeDepartment of Pediatrics, Yonsei University College of Medicine, Yonsei-ro 50, Seodaemun-gu, C.P.O. Box 8044, Seoul 03722, Korea. AZSAGM@yuhs.ac.ORCID 0000-0002-1511-9587
Jae Il ShinDepartment of Pediatrics, Yonsei University College of Medicine, Yonsei-ro 50, Seodaemun-gu, C.P.O. Box 8044, Seoul 03722, Korea. shinji@yuhs.ac.ORCID 0000-0003-2326-1820

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 1858T allele in the protein tyrosine phosphatase non-receptor type 22 (PTPN22) locus shows one of the strongest and most consistent genetic associations with autoimmune diseases. We synthesized all meta-analyses reporting a genetic association of the PTPN22 1858T C/T polymorphism with autoimmune diseases. This work examined their validity to discover false positive results under Bayesian methods. We conducted a PubMed search to identify relevant publications and extracted the respective results, published until 30 November 2018. In observational studies, the associations of 1858 C/T genetic variant were noteworthy for 12 autoimmune or autoimmunity-related diseases (rheumatoid arthritis, systemic lupus erythematosus, type 1 diabetes mellitus, juvenile idiopathic arthritis, Crohn's disease, anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitis, vitiligo, Graves' disease, myasthenia gravis, Addison's disease, giant cell arteritis, and endometriosis). In contrast, we could not confirm the noteworthiness for eight diseases (systemic sclerosis, psoriasis, Behçet's disease, autoimmune thyroid disease, alopecia areata, Sjögren's syndrome, inflammatory bowel disease, and ankylosing spondylitis). From the meta-analysis of genome-wide association studies (GWAS) with a

Indexed as

autoimmune diseaseBayesian false discovery probabilityfalse-positive report probabilitygenome wide association studymeta-analysisPTPN22single nucleotide polymorphism

Identifiers

PMID30871019
PMCPMC6462981

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.