Evidence map›Paper›PMID 30870557›Full record

ArticleJournal of experimental botany2019

Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca.

Karolina Heyduk, Jeremy N Ray, Saaravanaraj Ayyampalayam, Nida Moledina, Anne Borland, Scott A Harding, Chung-Jui Tsai, Jim Leebens-Mack

Abstract read
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Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Chlorophyll fluorescence responses to COJournal of plant research · 2025
    Article
  5. Transcriptomic Analysis of the CAM SpeciesPlants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. CBMC genomics · 2024
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. New perspectives on crassulacean acid metabolism biology.Journal of experimental botany · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Karolina HeydukDepartment of Plant Biology, University of Georgia, Athens, GA, USA.
Jeremy N RayDepartment of Plant Biology, University of Georgia, Athens, GA, USA.
Saaravanaraj AyyampalayamGeorgia Advanced Computing Resource Center, University of Georgia, Athens, GA, USA.
Nida MoledinaDepartment of Plant Biology, University of Georgia, Athens, GA, USA.
Anne BorlandSchool of Natural and Environmental Sciences, Newcastle University, Newcastle, UK.
Scott A HardingDepartment of Genetics, University of Georgia, Athens, GA, USA.
Chung-Jui TsaiDepartment of Genetics, University of Georgia, Athens, GA, USA.
Jim Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crassulacean acid metabolism (CAM) is a carbon-concentrating mechanism that has evolved numerous times across flowering plants and is thought to be an adaptation to water-limited environments. CAM has been investigated from physiological and biochemical perspectives, but little is known about how plants evolve from C3 to CAM at the genetic or metabolic level. Here we take a comparative approach in analyzing time-course data of C3, CAM, and C3+CAM intermediate Yucca (Asparagaceae) species. RNA samples were collected over a 24 h period from both well-watered and drought-stressed plants, and were clustered based on time-dependent expression patterns. Metabolomic data reveal differences in carbohydrate metabolism and antioxidant response between the CAM and C3 species, suggesting that changes to metabolic pathways are important for CAM evolution and function. However, all three species share expression profiles of canonical CAM pathway genes, regardless of photosynthetic pathway. Despite differences in transcript and metabolite profiles between the C3 and CAM species, shared time-structured expression of CAM genes in both CAM and C3Yucca species suggests that ancestral expression patterns required for CAM may have pre-dated its origin in Yucca.

Indexed as

Genes, PlantCarboxylic AcidsGene Expression Regulation, PlantMetabolomeMetabolomicsPhenotypePhotosynthesisYuccaCarboxylic AcidsAntioxidantcarbohydrateshybridmetabolomicsphotosynthesisRNA-SeqtranscriptomeYucca

Identifiers

PMID30870557
PMCPMC6883266

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.