Evidence map›Paper›PMID 30870464›Full record

ArticlePloS one2019

Detection of critical antibiotic resistance genes through routine microbiome surveillance.

Zachary M Burcham, Carl J Schmidt, Jennifer L Pechal, Christopher P Brooks, Jason W Rosch, M Eric Benbow, Heather R Jordan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Zachary M BurchamDepartment of Biological Sciences, Mississippi State University, Starkville, MS, United States of America.ORCID 0000-0003-1600-9643
Carl J SchmidtDepartment of Pathology, University of Michigan, Ann Arbor, MI, United States of America.
Jennifer L PechalDepartment of Entomology, Michigan State University, East Lansing, MI, United States of America.ORCID 0000-0002-2588-2519
Christopher P BrooksDepartment of Biological Sciences, Mississippi State University, Starkville, MS, United States of America.
Jason W RoschDepartment of Infectious Disease, St. Jude Children's Research Hospital, Memphis, TN, United States of America.
M Eric BenbowDepartment of Entomology, Michigan State University, East Lansing, MI, United States of America.
Heather R JordanDepartment of Biological Sciences, Mississippi State University, Starkville, MS, United States of America.ORCID 0000-0002-4197-2194
Mississippi State University · USMichigan State University · USSt. Jude Children's Research Hospital · USUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Population-based public health data on antibiotic resistance gene carriage is poorly surveyed. Research of the human microbiome as an antibiotic resistance reservoir has primarily focused on gut associated microbial communities, but data have shown more widespread microbial colonization across organs than originally believed, with organs previously considered as sterile being colonized. Our study demonstrates the utility of postmortem microbiome sampling during routine autopsy as a method to survey antibiotic resistance carriage in a general population. Postmortem microbial sampling detected pathogens of public health concern including genes for multidrug efflux pumps, carbapenem, methicillin, vancomycin, and polymixin resistances. Results suggest that postmortem assessments of host-associated microbial communities are useful in acquiring community specific data while reducing selective-participant biases.

Indexed as

Genes, BacterialMetagenomePopulation SurveillanceAnti-Bacterial AgentsBacteriaBacterial InfectionsCadaverDrug Resistance, MicrobialHumansMicrobiotaUnited StatesAnti-Bacterial Agents

Identifiers

PMID30870464
PMCPMC6417727
OpenAlexW2921424368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.