ArticleRNA biology2019
Using high-resolution annotation of insect mitochondrial DNA to decipher tandem repeats in the control region.
Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 50 citations in OpenAlex.
- Mitogenomic diversity and phylogenetic characterization of Aedes albopictus (Diptera: Culicidae) populations from the Black Sea region of Türkiye.Journal of medical entomology · 2026Article
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- Comparative Analyses Reveal Mitogenome Characteristics of Halictidae and Novel Rearrangement (Hymenoptera: Apoidea: Anthophila).Animals : an open access journal from MDPI · 2025Article
- Cytogenetic and Molecular Characterization ofInsects · 2025Article
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- Article
- Differences between phytophagous and predatory species in Pentatomidae based on the mitochondrial genome.Ecology and evolution · 2024Article
- Article
- Evolution of myxozoan mitochondrial genomes: insights from myxobolids.BMC genomics · 2024Article
- Article
- Article
- Full-Length Transcriptome Profiling ofGenes · 2023Article
- Article
- The complete mitochondrial genome ofZooKeys · 2023Article
- Complete Mitogenome Analysis of Five Leafhopper Species of Idiocerini (Hemiptera: Cicadellidae).Genes · 2022Article
- Article
- Article
- The complete mitochondrial genome of giant cricket,Mitochondrial DNA. Part B, Resources · 2022Article
- Review
- Molluscan mitochondrial genomes break the rules.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021Review
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we used a small RNA sequencing (sRNA-seq) based method to annotate the mitochondrial genome of the insect Erthesina fullo Thunberg at 1 bp resolution. The high-resolution annotations cover both entire strands of the mitochondrial genome without any gaps or overlaps. Most of the new annotations were consistent with the previous annotations which had been obtained using PacBio full-length transcripts. Two important findings were that animals transcribe both entire strands of mitochondrial genomes and the tandem repeats in the control region of the E. fullo mitochondrial genome contains the repeated Transcription Initiation Sites (TISs) of the heavy strand. In addition, we found that the copy numbers of tandem repeats showed a great diversity within an individual, suggesting that mitochondrial DNA recombination occurs in an individual. In conclusion, the sRNA-seq based method uses 5' and 3' end small RNAs to annotate nuclear non-coding and mitochondrial genes at 1 bp resolution, and can be used to identify new steady RNAs, particularly long non-coding RNAs (lncRNAs). The high-resolution annotations of mitochondrial genomes can also be used to study the molecular phylogenetics and evolution of animals or to investigate mitochondrial gene transcription, RNA processing, RNA maturation and several other related topics. The complete mitochondrial genome sequence of E. fullo with the new annotations using the sRNA-seq based method is available at the NCBI GenBank database under the accession number MK374364. We publish our theories, methods, the high quality sRNA-seq and RNA-seq data (SRA: SRP174926) for extensive use.
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