Evidence map›Paper›PMID 30868357›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2019

Rapid UHPLC-MS metabolite profiling and phenotypic assays reveal genotypic impacts of nitrogen supplementation in oats.

J William Allwood, Yun Xu, Pilar Martinez-Martin, Raphaёlle Palau, Alexander Cowan, Royston Goodacre, Athole Marshall, Derek Stewart, Catherine Howarth

Open access · hybridAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. OMICS in Fodder Crops: Applications, Challenges, and Prospects.Current issues in molecular biology · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Predictive Modeling for Metabolomics Data.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

J William AllwoodEnvironmental and Biochemical Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK. will.allwood@hutton.ac.uk.ORCID 0000-0001-6433-2694
Yun XuManchester Institute of Biotechnology, School of Chemistry, University of Manchester, Princess Street, Manchester, M1 7DN, UK.ORCID 0000-0003-3228-5111
Pilar Martinez-MartinInstitute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK.
Raphaёlle PalauEnvironmental and Biochemical Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK.
Alexander CowanInstitute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK.
Royston GoodacreManchester Institute of Biotechnology, School of Chemistry, University of Manchester, Princess Street, Manchester, M1 7DN, UK.ORCID 0000-0003-2230-645X
Athole MarshallInstitute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK.
Derek StewartEnvironmental and Biochemical Sciences, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK.ORCID 0000-0001-9838-4265
Catherine HowarthInstitute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK.ORCID 0000-0001-9364-0880
Aberystwyth University · GBJames Hutton Institute · GBUniversity of Liverpool · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H009582/1
6 · The paper itself

Abstract

introductionOats (Avena sativa L.) are a whole grain cereal recognised for their health benefits and which are cultivated largely in temperate regions providing both a source of food for humans and animals, as well as being used in cosmetics and as a potential treatment for a number of diseases. Oats are known as being a cereal source high in dietary fibre (e.g. β-glucans), as well as being high in antioxidants, minerals and vitamins. Recently, oats have been gaining increased global attention due to their large number of beneficial health effects. Consumption of oats has been proven to lower blood LDL cholesterol levels and blood pressure, thus reducing the risk of heart disease, as well as reducing blood-sugar and insulin levels.

objectivesOats are seen as a low input cereal. Current agricultural guidelines on nitrogen application are believed to be suboptimal and only consider the effect of nitrogen on grain yield. It is important to understand the role of both variety and of crop management in determining nutritional quality of oats. In this study the response of yield, grain quality and grain metabolites to increasing nitrogen application to levels greater than current guidelines were investigated.

methodsFour winter oat varieties (Mascani, Tardis, Balado and Gerald) were grown in a replicated nitrogen response trial consisting of a no added nitrogen control and four added nitrogen treatments between 50 and 200 kg N ha

resultsApplication of nitrogen had a significant effect on grain yield but there was no significant difference between the response of the four varieties. Grain quality traits however displayed significant differences both between varieties and nitrogen application level. β-glucan content significantly increased with nitrogen application. The UHPLC-MS approach has provided a rapid, sub 15 min per sample, metabolite profiling method that is repeatable and appropriate for the screening of large numbers of cereal samples. The method captured a wide range of compounds, inclusive of primary metabolites such as the amino acids, organic acids, vitamins and lipids, as well as a number of key secondary metabolites, including the avenanthramides, caffeic acid, and sinapic acid and its derivatives and was able to identify distinct metabolic phenotypes for the varieties studied. Amino acid metabolism was massively upregulated by nitrogen supplementation as were total protein levels, whilst the levels of organic acids were decreased, likely due to them acting as a carbon skeleton source. Several TCA cycle intermediates were also impacted, potentially indicating increased TCA cycle turn over, thus providing the plant with a source of energy and reductant power to aid elevated nitrogen assimilation. Elevated nitrogen availability was also directed towards the increased production of nitrogen containing phospholipids. A number of both positive and negative impacts on the metabolism of phenolic compounds that have influence upon the health beneficial value of oats and their products were also observed.

conclusionsAlthough the developed method has broad applicability as a rapid screening method or a rapid metabolite profiling method and in this study has provided valuable metabolic insights, it still must be considered that much greater confidence in metabolite identification, as well as quantitative precision, will be gained by the application of higher resolution chromatography methods, although at a large expense to sample throughput. Follow up studies will apply higher resolution GC (gas chromatography) and LC (reversed phase and HILIC) approaches, oats will be also analysed from across multiple growth locations and growth seasons, effectively providing a cross validation for the results obtained within this preliminary study. It will also be fascinating to perform more controlled experiments with sampling of green tissues, as well as oat grains, throughout the plants and grains development, to reveal greater insight of carbon and nitrogen metabolism balance, as well as resource partitioning into lipid and secondary metabolism.

Indexed as

AgricultureAnimalsAntioxidantsAvenaCaffeic AcidsChromatography, High Pressure LiquidCoumaric AcidsCrop ProductionEdible GrainGas Chromatography-Mass SpectrometryHumansMass SpectrometryMetabolomicsNitrogenPhenotypeSoilAntioxidantscaffeic acidCaffeic AcidsCoumaric AcidsNitrogensinapinic acidSoilAmino acidsAvenanthramidesAvena sativa L.Grain qualityLipidsMetabolomicsNitrogenOatsUHPLC-PDA-MSβ-Glucan

Identifiers

PMID30868357
PMCPMC6476850
OpenAlexW2920973450

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.