Evidence map›Paper›PMID 30868356›Full record

ArticleJournal of neuro-oncology2019

A PHLDB1 variant associated with the nonfunctional pituitary adenoma.

Lyoung Hyo Kim, Jeong-Hyun Kim, Suhg Namgoong, Hyun Sub Cheong, Seon-Jin Yoon, Eui Hyun Kim, Se Hoon Kim, Sun Ho Kim, Jong Hee Chang, Hyoung Doo Shin

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Journal of neuro-oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. PHLD Class Proteins: A Family of New Players in the p53 Network.International journal of molecular sciences · 2020
    Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Lyoung Hyo KimDepartment of Genetic Epidemiology, SNP Genetics Inc., Seoul, 04107, Republic of Korea.
Jeong-Hyun KimAsan Institute for Life Sciences, University of Ulsan Collage of Medicine, Seoul, 05505, Republic of Korea.
Suhg NamgoongDepartment of Genetic Epidemiology, SNP Genetics Inc., Seoul, 04107, Republic of Korea.
Hyun Sub CheongDepartment of Genetic Epidemiology, SNP Genetics Inc., Seoul, 04107, Republic of Korea.
Seon-Jin YoonDepartment of Neurosurgery, Pituitary Tumor Center, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Eui Hyun KimDepartment of Neurosurgery, Pituitary Tumor Center, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Se Hoon KimDepartment of Pathology, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Sun Ho KimDepartment of Neurosurgery, Pituitary Tumor Center, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea. sunkim@yuhs.ac.
Jong Hee ChangDepartment of Neurosurgery, Pituitary Tumor Center, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Hyoung Doo ShinDepartment of Genetic Epidemiology, SNP Genetics Inc., Seoul, 04107, Republic of Korea. hdshin@sogang.ac.kr.ORCID http://orcid.org/0000-0003-1732-7838
Yonsei University · KRSNP Genetics (South Korea) · KRSogang University · KRUniversity of Ulsan · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposePrevious studies have revealed that PHLDB1 single-nucleotide polymorphisms (SNPs) are associated with glioma risk. Nonetheless, the association between PHLDB1 SNPs and the risk of pituitary adenoma has not been studied. The present study evaluated the association of PHLDB1 SNPs with the risk of pituitary adenomas.

methodsWe genotyped 27 PHLDB1 tagging and exon SNPs in a case-control study that included 148 patients who got a diagnosis of nonfunctional pituitary adenoma (NFPA) and 375 normal controls within the Korean population. Statistical analyses of the association between PHLDB1 SNPs and the NFPA risk were conducted using logistic regression.

resultsWe detected an association between a PHLDB1 SNP and the risk of NFPA in the Korean population. Rs67307131 in intron 2 was significantly associated with NFPA (odds ratio [OR] = 2.15, 95% confidence interval [CI] 1.44-3.20; P = 0.0002 in the dominant model). In the referent analysis, a higher OR and stronger association (lower P value) were observed among patients with the "C/T" genotype (OR = 2.39, 95% CI 1.60-3.58; P = 0.00002). In a functional analysis with a SNP annotation tool, this SNP was predicted to be a CpG site and copy number variant; these properties are associated with susceptibility to diseases.

conclusionsOur findings suggest that genetic variation of PHLDB1 may be associated with the risk of NFPA. This is the first report of an association between PHLDB1 variants and NFPA. Further research is needed to confirm the impact of this SNP on NFPA susceptibility.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdenomaCase-Control StudiesComputer SimulationCpG IslandsDNA Copy Number VariationsFemaleHaplotypesHumansIntracellular Signaling Peptides and ProteinsIntronsLinkage DisequilibriumMaleMiddle AgedModels, GeneticIntracellular Signaling Peptides and ProteinsNerve Tissue ProteinsPHLDB1 protein, humanNonfunctional pituitary adenoma (NFPA)PHLDB1Single nucleotide polymorphism (SNP)

Identifiers

PMID30868356
OpenAlexW2921740205

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.