Evidence map›Paper›PMID 30868269›Full record

ArticleWorld journal of microbiology & biotechnology2019

Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.

Bettina Bóka, László Manczinger, Sándor Kocsubé, Kadaikunnan Shine, Naiyf S Alharbi, Jamal M Khaled, Martin Münsterkötter, Csaba Vágvölgyi, László Kredics

Open access · hybridAbstract read
In one paragraph

Article in World journal of microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Genomic insights into three Bacillus strains for biocontrol of tobacco black shank disease.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Discrimination ofJournal of microbiology and biotechnology · 2022
    Article
  8. Molecular characterization of a novel strain ofFrontiers in plant science · 2022
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Bettina BókaDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.
László ManczingerDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.ORCID http://orcid.org/0000-0003-1031-7522
Sándor KocsubéDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.ORCID http://orcid.org/0000-0001-7839-0510
Kadaikunnan ShineDepartment of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.ORCID http://orcid.org/0000-0001-7018-5379
Naiyf S AlharbiDepartment of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.ORCID http://orcid.org/0000-0001-5820-9649
Jamal M KhaledDepartment of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.
Martin MünsterkötterFunctional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401, Hungary.ORCID http://orcid.org/0000-0002-0044-2381
Csaba VágvölgyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.ORCID http://orcid.org/0000-0003-0009-7773
László KredicsDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary. kredics@bio.u-szeged.hu.ORCID http://orcid.org/0000-0002-8837-3973
University of Szeged · HUKing Saud University · SAUniversity of Sopron · HU

Funding

Horizon 2020 GINOP-2.3.2-15-2016-00052King Saud University International Scientific Partnership ProgramMagyar Tudományos Akadémia János Bolyai Research Scholarship
6 · The paper itself

Abstract

Several Bacillus strains are used as biocontrol agents, as they frequently have strong antagonistic effects against microbial plant pathogens. Bacillus strain SZMC 6179J, isolated from tomato rhizosphere, was previously shown to have excellent in vitro antagonistic properties against the most important fungal pathogens of tomato (Alternaria solani, Botrytis cinerea, Phytophthora infestans and Sclerotinia sclerotiorum) as well as several Fusarium species. Taxonomic investigations revealed that it is a member of the B. subtilis subsp. subtilis group and very closely related with the reference type strain B. subtilis subsp. subtilis 168. The sequenced genome of strain SZMC 6179J contains the genes responsible for the synthesis of the extracellular antibiotics surfactin, fengycin and bacilysin. Compared to strain 168, a prophage-like region is missing from the genome of SZMC 6179J, while there are 106 single nucleotide polymorphisms and 23 deletion-insertion polymorphisms. The high biocontrol potential of strain SZMC 6179J may results from a single base deletion in the sfp gene encoding the transcription factor of the surfactin and fengycin operons. Hypermutated regions reflecting short-time evolutionary processes could be detected in SZMC 6179J. The deletion-insertion polymorphism in the sfp gene and the detected hypermutations can be suggested as genetic determinants of biocontrol features in B. subtilis.

Indexed as

MutationAmino Acid SequenceAnti-Bacterial AgentsAntifungal AgentsBacillus subtilisBacterial ToxinsBiological Control AgentsDipeptidesFungiGenes, BacterialLipopeptidesMultigene FamilyMultilocus Sequence TypingPeptides, CyclicPhylogenyPlant DiseasesAnti-Bacterial AgentsAntifungal AgentsbacilysinBacterial ToxinsBiological Control AgentsDipeptidesfengycinLipopeptidesPeptides, Cyclicsurfactin peptideTranscription FactorsBacillus subtilisBiocontrolFengycinGenome analysisHypermutationSurfactin

Identifiers

PMID30868269
PMCPMC6435635
OpenAlexW2920959005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.