Evidence map›Paper›PMID 30868185›Full record

ArticlePediatric cardiology2019

Rare Copy Number Variations Might Not be Involved in the Molecular Pathogenesis of PA-IVS in an Unselected Chinese Cohort.

Xiaomin He, Xiaoqing Zhang, Hui Jing, Xiaoyang Zhang, Manchen Gao, Huiwen Chen, Juan Geng, Zhaojing Zheng, Qihua Fu, Zhongqun Zhu and 1 more

Abstract read
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In one paragraph

Article in Pediatric cardiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Xiaomin HeDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China.
Xiaoqing ZhangThe Department of Laboratory Medicine, Shanghai Children's Medical Center, Shanghai Jiaotong University School of Medicine, Shanghai, 200127, China.
Hui JingDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China.
Xiaoyang ZhangDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China.
Manchen GaoDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China.
Huiwen ChenDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China.
Juan GengHangzhou Joingenome Diagnostics, Hangzhou, 311188, China.
Zhaojing ZhengHangzhou Joingenome Diagnostics, Hangzhou, 311188, China.
Qihua FuThe Department of Laboratory Medicine, Shanghai Children's Medical Center, Shanghai Jiaotong University School of Medicine, Shanghai, 200127, China.
Zhongqun ZhuDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China. zzqheart@aliyun.com.
Jinghao ZhengDepartment of Pediatric Cardiothoracic Surgery, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, 1678 Dongfang Road, Shanghai, 200127, China. zhengjh210@163.com.ORCID http://orcid.org/0000-0001-7459-6730
Shanghai Jiao Tong University · CNDian Diagnostics (China) · CNShanghai Children's Medical Center · CN

Funding

National Key R&D Program of China 2017YFC1308100National Natural Science Foundation of China 81501604National Natural Science Foundation of China 81771977the Biomedical Engineering Fund of Shanghai Jiao Tong University YG2015MS34the Science and Technology Development Fund of Pudong New Area PKJ2017-Y02
6 · The paper itself

Abstract

Congenital heart defect (CHD) is one of the most common birth defects in China, while pulmonary atresia with intact ventricular septum (PA-IVS) is the life-threatening form of CHD. Numerous previous studies revealed that rare copy number variants (CNVs) play important roles in CHD, but little is known about the prevalence and role of rare CNVs in PA-IVS. In this study, we conducted a genome-wide scanning of rare CNVs in an unselected cohort consisted of 54 Chinese patients with PA-IVS and 20 patients with pulmonary atresia with ventricular septal defect (PA-VSD). CNVs were identified in 6/20 PA-VSD patients (30%), and three of these CNVs (15%) were considered potentially pathogenic. Two pathogenic CNVs occurred at a known CHD locus (22q11.2) and one likely pathogenic deletion located at 13q12.12. However, no rare CNVs were detected in patients with PA-IVS. Potentially pathogenic CNVs were more enriched in PA-VSD patients than in PA-IVS patients (p = 0.018). No rare CNVs were detected in patients with PA-IVS in our study. PA/IVS might be different from PA/VSD in terms of genetics as well as anatomy.

Indexed as

Asian PeopleChildChild, PreschoolChinaDNA Copy Number VariationsFemaleGenome-Wide Association StudyHeart Defects, CongenitalHeart Septal Defects, VentricularHumansInfantInfant, NewbornMalePhenotypePrevalencePulmonary AtresiaCongenital heart defect (CHD)Copy number variant (CNV)Pulmonary atresia with intact ventricular septum (PA–IVS)Pulmonary atresia with ventricular septal defect (PA–VSD)

Identifiers

PMID30868185
OpenAlexW2921049404

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.