Evidence map›Paper›PMID 30868116›Full record

ArticleEpilepsia open2019

Exome sequencing identifies molecular diagnosis in children with drug-resistant epilepsy.

Mandy Ho-Yin Tsang, Gordon Ka-Chun Leung, Alvin Chi-Chung Ho, Kit-San Yeung, Christopher Chun-Yu Mak, Steven Lim-Cho Pei, Mullin Ho-Chung Yu, Anita Sik-Yau Kan, Kelvin Yuen-Kwong Chan, Karen Ling Kwong and 4 more

Open access · goldAbstract read
In one paragraph

Article in Epilepsia open, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Genetically guided precision medicine clinical decision support tools: a systematic review.Journal of the American Medical Informatics Association : JAMIA · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Mandy Ho-Yin TsangDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Gordon Ka-Chun LeungDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Alvin Chi-Chung HoDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Kit-San YeungDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Christopher Chun-Yu MakDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Steven Lim-Cho PeiDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Mullin Ho-Chung YuDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Anita Sik-Yau KanDepartment of Obstetrics and Gynaecology Tsan Yuk Hospital Hong Kong SAR China.
Kelvin Yuen-Kwong ChanDepartment of Obstetrics and Gynaecology Tsan Yuk Hospital Hong Kong SAR China.
Karen Ling KwongDepartment of Paediatrics & Adolescent Medicine Tuen Mun Hospital Hong Kong Hong Kong.
So-Lun LeeDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Ada Wing-Yan YungDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Cheuk-Wing FungDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
Brian Hon-Yin ChungDepartment of Paediatrics & Adolescent Medicine LKS Faculty of Medicine The University of Hong Kong Hong Kong SAR China.
University of Hong Kong · HKDuchess of Kent Children's Hospital · CNTsan Yuk Hospital · CNTuen Mun Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveEarly onset drug-resistant epilepsy is a neurologic disorder in which 2 antiepileptic drugs fail to maintain the seizure-free status of the patient. Heterogeneous clinical presentations make the diagnosis challenging. We aim to identify the underlying genetic causes of a pediatric cohort with drug-resistant epilepsy and evaluate whether the findings can provide information on patient management.

methodsWe include patients with drug-resistant epilepsy onset before 18 years of age. Singleton clinical chromosomal microarray (CMA) followed by whole exome sequencing (WES) was performed using genomic DNA. In the first-tier analysis of the exome data, we aimed to identify disease-causing mutations in 546 genes known to cause, or to be associated with, epilepsy. For negative cases, we proceeded to exome-wide analysis. Rare coding variants were interrogated for pathogenicity based on the American College of Medical Genetics and Genomics (ACMG) guidelines.

resultsWe recruited 50 patients. We identified 6 pathogenic or likely pathogenic mutations, giving a diagnostic yield of 12%. Mutations were found in 6 different genes: SIGNIFICANCE: Our study suggests that singleton WES is an effective diagnostic tool for drug-resistant epilepsy. Genetic diagnosis can help to consolidate the clinical diagnosis, to facilitate phenotypic expansion, and to influence treatment and management options for seizure control in our patients. In our study, a significant portion of the genetic findings are known to be associated with an increased risk of sudden unexpected death in epilepsy (SUDEP). These findings could assist with more appropriate management in patients with epilepsy.

Indexed as

chromosomal microarrayPediatric‐onset drug‐resistant epilepsywhole exome sequencing

Identifiers

PMID30868116
PMCPMC6398105
OpenAlexW2899293265

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.