Evidence map›Paper›PMID 30867460›Full record

ArticleScientific reports2019

Crystal structures of thiamine monophosphate kinase from Acinetobacter baumannii in complex with substrates and products.

Amy H Sullivan, David M Dranow, Peter S Horanyi, Donald D Lorimer, Thomas E Edwards, Jan Abendroth

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Amy H SullivanUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA.
David M DranowUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA.
Peter S HoranyiUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA.
Donald D LorimerUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA.
Thomas E EdwardsUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA.
Jan AbendrothUCB/Beryllium Discovery, 98110, 7869 NE Day Road West, Bainbridge Island, WA, USA. jan.abendroth@ucb.com.ORCID 0000-0002-8229-3243
Beryllium (United States) · USJoint Center for Structural Genomics · US

Funding

NIAID NIH HHS HHSN272201700059CNIDA NIH HHS HHSN271201700059C
6 · The paper itself

Abstract

Thiamine monophosphate kinase (ThiL) catalyzes the last step of thiamine pyrophosphate (TPP) synthesis, the ATP-dependent phosphorylation of thiamine monophosphate (TMP) to thiamine pyrophosphate. We solved the structure of ThiL from the human pathogen A. baumanii in complex with a pair of substrates TMP and a non-hydrolyzable adenosine triphosphate analog, and in complex with a pair of products TPP and adenosine diphosphate. High resolution of the data and anomalous diffraction allows for a detailed description of the binding mode of substrates and products, and their metal environment. The structures further support a previously proposed in-line attack reaction mechanism and show a distinct variability of metal content of the active site.

Indexed as

Acinetobacter baumanniiAdenosine DiphosphateAdenosine TriphosphateCatalytic DomainCrystallizationPhosphotransferases (Phosphate Group Acceptor)Thiamine PyrophosphateAdenosine DiphosphateAdenosine TriphosphatePhosphotransferases (Phosphate Group Acceptor)Thiamine Pyrophosphatethiamin-phosphate kinase

Identifiers

PMID30867460
PMCPMC6416309
OpenAlexW2921054178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.