ArticleScientific reports2019
Field transcriptome revealed a novel relationship between nitrate transport and flowering in Japanese beech.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Effect of fieldwork-friendly coffee blender-based extraction methods and leaf tissue storage on the transcriptome of non-model plants.Journal of plant research · 2025Article
- Simulation study of factors affecting the accuracy of transcriptome models under complex environments.Plant molecular biology · 2025Article
- Circadian and environmental signal integration in a natural population ofProceedings of the National Academy of Sciences of the United States of America · 2024Article
- Optimal seasonal schedule for the production of isoprene, a highly volatile biogenic VOC.Scientific reports · 2024Article
- Leaf gene expression trajectories during the growing season are consistent between sites and years in American beech.Proceedings. Biological sciences · 2024Article
- Summer solstice orchestrates the subcontinental-scale synchrony of mast seeding.Nature plants · 2024Article
- Natural disturbances and masting: from mechanisms to fitness consequences.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021Review
- A brief history of masting research.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021Article
- Studying the genetic basis of masting.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021Article
- Field-transcriptome analyses reveal developmental transitions during flowering in cassava (Manihot esculenta Crantz).Plant molecular biology · 2021Article
- Article
- Molecular control of masting: an introduction to an epigenetic summer memory.Annals of botany · 2020Review
- From theory to experiments for testing the proximate mechanisms of mast seeding: an agenda for an experimental ecology.Ecology letters · 2020Review
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Authors and funding
5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Recent advances in molecular and genetic studies about flowering time control have been increasingly available to elucidate the physiological mechanism underlying masting, the intermittent and synchronized production of a large amount of flowers and seeds in plant populations. To identify unexplored developmental and physiological processes associated with masting, genome-wide transcriptome analysis is a promising tool, but such analyses have yet to be performed. We established a field transcriptome using a typical masting species, Japanese beech (Fagus crenata Blume), over two years, and analyzed the data using a nonlinear time-series analysis called convergent cross mapping. Our field transcriptome was found to undergo numerous changes depending on the status of floral induction and season. An integrated approach of high-throughput transcriptomics and causal inference was successful at detecting novel causal regulatory relationships between nitrate transport and florigen synthesis/transport in a forest tree species. The synergistic activation of nitrate transport and floral transition could be adaptive to simultaneously satisfy floral transition at the appropriate timing and the nitrogen demand needed for flower formation.
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