ArticleNature communications2019
Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses.
Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 102 papers.
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Who cites it
102 citing papers in PubMed.
- The dynamics of introgression and parallel adaptation across North AmericanProceedings of the National Academy of Sciences of the United States of America · 2026Article
- Optimized protocol for efficient generation, confirmation, transformation, and CRISPR editing of grapevine hairy roots.Journal of experimental botany · 2026Article
- Genomic and population analyses reveal asymmetric subgenome evolution and local adaptation in the polyploid Lycopus lucidus.Communications biology · 2026Article
- Insights into lentil diversity, domestication, and the genetic basis of important agronomic traits through resequencing of 238 Lens accessions.The Plant journal : for cell and molecular biology · 2026Article
- Ancient DNA reveals 4000 years of grapevine diversity, viticulture and clonal propagation in France.Nature communications · 2026Article
- Population structure of wild and cultivated grapevines in Armenia.BMC plant biology · 2026Article
- Unlocking tropical adaptation: novel flowering time genes implicate JA and ROS signaling in maize.BMC plant biology · 2026Article
- Genome-Wide, High-Density Genotyping Approaches for Plant Germplasm Characterisation (Methods and Applications).International journal of molecular sciences · 2025Review
- Grapevine phyllosphere pan-metagenomics reveals pan-microbiome structure, diversity, and functional roles in downy mildew resistance.Microbiome · 2025Article
- The winner takes it all: a single genotype of Kalanchoe × houghtonii is a global invader.Annals of botany · 2025Article
- GWAS identifies a molecular marker cluster associated with monoterpenoids in grapes.Horticulture research · 2025Article
- Integrating Dense Genotyping with High-Throughput Phenotyping Empowers the Genetic Dissection of Berry Quality and Resilience Traits in Grapevine.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Comprehensive genomic and phenotypic analyses reveal the genetic basis of fruit quality in litchi.Genome biology · 2025Article
- Genetic diversity and adaptive evolutionary history of Sapindus in China: insights from whole-genome resequencing of 100 representative individuals.Plant biotechnology journal · 2025Article
- Article
- Leveraging Whole-Genome Resequencing to Uncover Genetic Diversity and Promote Conservation Strategies for Ruminants in Asia.Animals : an open access journal from MDPI · 2025Review
- Super pangenome of Vitis empowers identification of downy mildew resistance genes for grapevine improvement.Nature genetics · 2025Article
- Genome Scan Analysis for Advancing Knowledge and Conservation Strategies of Primitivo Clones (Plants (Basel, Switzerland) · 2025Article
- Exploration of chaos game representation and integrative deep learning approaches for whole-genome sequencing-based grapevine genetic testing.Bioinformatics advances · 2025Article
- Genome-Wide Analysis of the Hsf Gene Family inInternational journal of molecular sciences · 2024Article
42 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
24 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding the Vitis species at the genomic level is important for cultivar improvement of grapevine. Here we report whole-genome genetic variation at single-base resolution of 472 Vitis accessions, which cover 48 out of 60 extant Vitis species from a wide geographic distribution. The variation helps to identify a recent dramatic expansion and contraction of effective population size in the domesticated grapevines and that cultivars from the pan-Black Sea region have a unique demographic history in comparison to the other domesticated cultivars. We also find selective sweeps for berry edibility and stress resistance improvement. Furthermore, we find associations between candidate genes and important agronomic traits, such as berry shape and aromatic compounds. These results demonstrate resource value of the resequencing data for illuminating the evolutionary biology of Vitis species and providing targets for grapevine genetic improvement.
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